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LOC105376747 collagen alpha-3(IX) chain-like [ Homo sapiens (human) ]

Gene ID: 105376747, discontinued on 10-Apr-2022

Summary

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Gene symbol
LOC105376747
Gene description
collagen alpha-3(IX) chain-like
Gene type
protein coding
RefSeq status
WITHDRAWN
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
DISCONTINUED: This record has been withdrawn by NCBI because the model on which it was based was not predicted in a later annotation.
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
16p13.11
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 latest, but not current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (14734878..14743326, complement)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000016.10 Chromosome 16 Reference GRCh38.p13 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

General protein information

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Names
collagen alpha-3(IX) chain-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119 (NOTE: not current)

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    14734878..14743326 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017023973.1 → XP_016879462.1  

  2. XM_017023974.1 → XP_016879463.1  

Gene LinkOut

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