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LINC02663 long intergenic non-protein coding RNA 2663 [ Homo sapiens (human) ]

Gene ID: 105376402, updated on 17-Sep-2024

Summary

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Official Symbol
LINC02663provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2663provided by HGNC
Primary source
HGNC:HGNC:54149
See related
AllianceGenome:HGNC:54149
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
XLOC_008466
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
10p14
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (9443281..9878094, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (9447967..9889187, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2676 Neighboring gene uncharacterized LOC101928272 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:9315328-9315828 Neighboring gene long intergenic non-protein coding RNA 709 Neighboring gene NANOG hESC enhancer GRCh37_chr10:9384821-9385337 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2989 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2990 Neighboring gene uncharacterized LOC124902542 Neighboring gene heat shock protein 90 alpha family class B member 7, pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr10:9919079-9919241 Neighboring gene uncharacterized LOC105376403 Neighboring gene long intergenic non-protein coding RNA 2670

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Long Non-Coding RNA XLOC_008466 Functions as an Oncogene in Human Non-Small Cell Lung Cancer by Targeting miR-874. Yang R, et al. Cell Physiol Biochem, 2017. PMID 28501870

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    9443281..9878094 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_930643.2 RNA Sequence

  2. XR_930644.2 RNA Sequence

  3. XR_930645.3 RNA Sequence

  4. XR_930646.1 RNA Sequence

  5. XR_001747363.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    9447967..9889187 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007081534.1 RNA Sequence

  2. XR_007081535.1 RNA Sequence

  3. XR_007081536.1 RNA Sequence

  4. XR_007081537.1 RNA Sequence

  5. XR_007081538.1 RNA Sequence

Nucleotide Protein
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