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TMEM252-DT TMEM252 divergent transcript [ Homo sapiens (human) ]

Gene ID: 105376072, updated on 29-Mar-2023

Summary

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Official Symbol
TMEM252-DTprovided by HGNC
Official Full Name
TMEM252 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:54377
See related
Ensembl:ENSG00000226337 AllianceGenome:HGNC:54377
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See TMEM252-DT in Genome Data Viewer
Location:
9q21.11
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_03 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (68540982..68644340)
RS_2023_03 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (80714573..80817866)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene phosphoglucomutase 5 Neighboring gene uncharacterized LOC124902174 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:71177322-71177856 Neighboring gene long intergenic non-protein coding RNA 1506 Neighboring gene transmembrane protein 252 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:71210490-71210990 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:71210991-71211491 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:71231697-71232198 Neighboring gene uncharacterized LOC105376071 Neighboring gene dermatan sulfate epimerase pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr9:71283997-71284549 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:71319670-71320595 Neighboring gene phosphatidylinositol-4-phosphate 5-kinase type 1 beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    68540982..68644340
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007061564.1 RNA Sequence

  2. XR_001746701.3 RNA Sequence

    Related
    ENST00000413269.3

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    80714573..80817866
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007080580.1 RNA Sequence

  2. XR_007080581.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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