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LOC105374511 uncharacterized LOC105374511 [ Homo sapiens (human) ]

Gene ID: 105374511, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105374511
Gene description
uncharacterized LOC105374511
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105374511 in Genome Data Viewer
Location:
4p15.31
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (19455418..19937562)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (19438142..19920233)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (19457041..19939185)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986263 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21361 Neighboring gene NANOG hESC enhancer GRCh37_chr4:19012316-19012830 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:19085315-19085875 Neighboring gene RNA, 5S ribosomal pseudogene 157 Neighboring gene long intergenic non-protein coding RNA 2438 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_77337 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:19431070-19431946 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_77374 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:19777224-19778423 Neighboring gene ribosomal protein L21 pseudogene 46 Neighboring gene uncharacterized LOC105374513 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:20029655-20030854 Neighboring gene uncharacterized LOC105374514

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188378.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079755, AC103562

  2. NR_188379.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079755, AC103562

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    19455418..19937562
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    19438142..19920233
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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