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COPS8-DT COPS8 divergent transcript [ Homo sapiens (human) ]

Gene ID: 105373951, updated on 25-Oct-2023

Summary

Official Symbol
COPS8-DTprovided by HGNC
Official Full Name
COPS8 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55816
See related
Ensembl:ENSG00000227252
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See COPS8-DT in Genome Data Viewer
Location:
2q37.3
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (236910771..237085821, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (237401969..237576912, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373949 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237682540-237683040 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237683041-237683541 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237701553-237702280 Neighboring gene uncharacterized LOC107986002 Neighboring gene NANOG hESC enhancer GRCh37_chr2:237719656-237720238 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237726720-237727220 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237818251-237818750 Neighboring gene Sharpr-MPRA regulatory region 6837 Neighboring gene NANOG hESC enhancer GRCh37_chr2:237874235-237874736 Neighboring gene Sharpr-MPRA regulatory region 9900 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237877273-237877772 Neighboring gene RNA, U6 small nuclear 1051, pseudogene Neighboring gene uncharacterized LOC105373950 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237965249-237965748 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17363 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17364 Neighboring gene uncharacterized LOC93463 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:237984273-237984842 Neighboring gene H3K27ac hESC enhancers GRCh37_chr2:237993578-237994472 and GRCh37_chr2:237994473-237995367 Neighboring gene COP9 signalosome subunit 8 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:238034737-238035252 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:238035253-238035767 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:238036745-238037304 Neighboring gene uncharacterized LOC124906127 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:238046259-238046762 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:238046763-238047265

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_186114.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC012063, AC105760
  2. NR_186115.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC012063, AC105760
  3. NR_186116.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC105760
  4. NR_187934.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011286, AC012063, AC105760
    Related
    ENST00000662924.1
  5. NR_187935.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC012063, AC105760
    Related
    ENST00000669095.1
  6. NR_187936.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC012063, AC105760
    Related
    ENST00000666653.1
  7. NR_187937.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC012063, AC105760
  8. NR_187938.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC012063, AC105760
  9. NR_187940.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC012063, AC105760
  10. NR_187943.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC012063, AC105760

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    236910771..237085821 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    237401969..237576912 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)