U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

COPS8-DT COPS8 divergent transcript [ Homo sapiens (human) ]

Gene ID: 105373951, updated on 28-Oct-2024

Summary

Go to the top of the page Help
Official Symbol
COPS8-DTprovided by HGNC
Official Full Name
COPS8 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55816
See related
Ensembl:ENSG00000227252 AllianceGenome:HGNC:55816
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See COPS8-DT in Genome Data Viewer
Location:
2q37.3
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (236910771..237085821, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (237401969..237576912, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (237819414..237994464, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373949 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237682540-237683040 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237683041-237683541 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237701553-237702280 Neighboring gene uncharacterized LOC107986002 Neighboring gene NANOG hESC enhancer GRCh37_chr2:237719656-237720238 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237726720-237727220 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237818251-237818750 Neighboring gene Sharpr-MPRA regulatory region 6837 Neighboring gene NANOG hESC enhancer GRCh37_chr2:237874235-237874736 Neighboring gene Sharpr-MPRA regulatory region 9900 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237877273-237877772 Neighboring gene RNA, U6 small nuclear 1051, pseudogene Neighboring gene uncharacterized LOC105373950 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237965249-237965748 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17363 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17364 Neighboring gene uncharacterized LOC93463 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:237984273-237984842 Neighboring gene H3K27ac hESC enhancers GRCh37_chr2:237993578-237994472 and GRCh37_chr2:237994473-237995367 Neighboring gene COP9 signalosome subunit 8 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:238034737-238035252 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:238035253-238035767 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:238036745-238037304 Neighboring gene uncharacterized LOC124906127 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:238046259-238046762 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:238046763-238047265

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

Go to the top of the page Help

Clone Names

  • FLJ31684, AC105760.2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_186114.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC012063, AC105760

  2. NR_186115.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC012063, AC105760

  3. NR_186116.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC105760

  4. NR_187934.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011286, AC012063, AC105760
    Related
    ENST00000662924.1

  5. NR_187935.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC012063, AC105760
    Related
    ENST00000669095.1

  6. NR_187936.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC012063, AC105760
    Related
    ENST00000666653.1

  7. NR_187937.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC012063, AC105760

  8. NR_187938.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC012063, AC105760

  9. NR_187940.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC012063, AC105760

  10. NR_187943.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC012063, AC105760

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    236910771..237085821 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    237401969..237576912 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials