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RAB4A-AS1 RAB4A antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105373159, updated on 17-Aug-2024

Summary

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Official Symbol
RAB4A-AS1provided by HGNC
Official Full Name
RAB4A antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:55934
See related
Ensembl:ENSG00000177788
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 2.1), thyroid (RPKM 1.9) and 24 other tissues See more
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Genomic context

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Location:
1q42.13
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (229256892..229271154, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (228635568..228649830, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (229392639..229406901, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:229223803-229224521 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:229227240-229228172 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:229228173-229229104 Neighboring gene long intergenic non-protein coding RNA 2815 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229244515-229245036 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:229243991-229244514 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229251653-229252154 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229252155-229252654 Neighboring gene Sharpr-MPRA regulatory region 2560 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229295511-229296011 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229297904-229298404 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229298405-229298905 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:229309691-229310255 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:229313110-229314036 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:229314037-229314963 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:229314964-229315890 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2699 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:229333469-229333968 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:229338935-229339572 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:229341375-229341982 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229356687-229357188 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229357189-229357688 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229360637-229361210 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:229363801-229364526 Neighboring gene Sharpr-MPRA regulatory region 11146 Neighboring gene uncharacterized LOC102723935 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:229388645-229389519 Neighboring gene uncharacterized LOC124904540 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:229389520-229390393 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1925 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1926 Neighboring gene transmembrane protein 78 Neighboring gene RAB4A, member RAS oncogene family Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:229470989-229471498 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1927 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1928 Neighboring gene Sharpr-MPRA regulatory region 13048 Neighboring gene centriole, cilia and spindle associated protein Neighboring gene MPRA-validated peak753 silencer Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:229516888-229517495 Neighboring gene RNA, U6 small nuclear 180, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_149312.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL162595
    Related
    ENST00000653511.1

  2. NR_149313.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL162595
    Related
    ENST00000654028.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    229256892..229271154 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    228635568..228649830 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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