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LINC01717 long intergenic non-protein coding RNA 1717 [ Homo sapiens (human) ]

Gene ID: 105372893, updated on 22-Oct-2024

Summary

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Official Symbol
LINC01717provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1717provided by HGNC
Primary source
HGNC:HGNC:52504
See related
Ensembl:ENSG00000232812 AllianceGenome:HGNC:52504
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.9) See more
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Genomic context

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See LINC01717 in Genome Data Viewer
Location:
1q32.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (208728688..208733184)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (207975528..207980024)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (208902033..208906529)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_2148 Neighboring gene long intergenic non-protein coding RNA 2769 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:208825704-208825890 Neighboring gene uncharacterized LOC105372892 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_2240 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_2254 Neighboring gene ribosomal protein S26 pseudogene 13 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_2323 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_2353 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_2428 Neighboring gene uncharacterized LOC107985255 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2464 Neighboring gene long intergenic non-protein coding RNA 1774 Neighboring gene uncharacterized LOC105372895 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2465

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146914.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA399972, AA401307
    Related
    ENST00000415754.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    208728688..208733184
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    207975528..207980024
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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