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LINC01673 long intergenic non-protein coding RNA 1673 [ Homo sapiens (human) ]

Gene ID: 105372763, updated on 17-Sep-2024

Summary

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Official Symbol
LINC01673provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1673provided by HGNC
Primary source
HGNC:HGNC:52461
See related
Ensembl:ENSG00000234052 AllianceGenome:HGNC:52461
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01673 in Genome Data Viewer
Location:
21q21.3
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (27638618..27675030)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (25998507..26034887)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (29010937..29047349)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372762 Neighboring gene ribosomal protein L10 pseudogene 1 Neighboring gene nicastrin pseudogene 1 Neighboring gene long intergenic non-protein coding RNA 113 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:29390498-29390664 Neighboring gene long intergenic non-protein coding RNA 314

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Clone Names

  • AP001607.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183536.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP001607
    Related
    ENST00000426418.2

  2. NR_183537.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP001607
    Related
    ENST00000660773.1

  3. NR_183538.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP001607
    Related
    ENST00000668267.1

  4. NR_183539.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP001607
    Related
    ENST00000662686.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    27638618..27675030
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    25998507..26034887
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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