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LINC02088 long intergenic non-protein coding RNA 2088 [ Homo sapiens (human) ]

Gene ID: 105371582, updated on 9-Jun-2025
Official Symbol
LINC02088provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2088provided by HGNC
Primary source
HGNC:HGNC:52939
See related
AllianceGenome:HGNC:52939
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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See LINC02088 in Genome Data Viewer
Location:
17p11.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (20612978..20633251, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (20561615..20581892, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (20516291..20536564, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:20487547-20488084 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:20489421-20489620 Neighboring gene zinc finger SWIM-type containing 5 pseudogene 2 Neighboring gene Meis homeobox 3 pseudogene 2 Neighboring gene differentially expressed in FDCP 8 homolog (mouse) pseudogene Neighboring gene ribosomal protein S6 kinase B1 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20543293-20543793 Neighboring gene uncharacterized LOC105371583 Neighboring gene cytospin B pseudogene Neighboring gene LCR17pD recombination region Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11869 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20601656-20602156 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20602157-20602657 Neighboring gene ring finger protein, transmembrane 1 pseudogene 3

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Clone Names

  • AC087499.10

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146887.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC087499, BQ881024

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    20612978..20633251 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    20561615..20581892 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)