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LINC03064 long intergenic non-protein coding RNA 3064 [ Homo sapiens (human) ]

Gene ID: 105371264, updated on 28-Oct-2024

Summary

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Official Symbol
LINC03064provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 3064provided by HGNC
Primary source
HGNC:HGNC:56372
See related
Ensembl:ENSG00000260963 AllianceGenome:HGNC:56372
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC03064 in Genome Data Viewer
Location:
16q12.2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (52607060..52614771)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (58404935..58412648)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (52640972..52648683)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene VISTA enhancer hs1300 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:52472926-52473426 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:52473427-52473927 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:52504393-52505003 Neighboring gene TOX high mobility group box family member 3 Neighboring gene NANOG hESC enhancer GRCh37_chr16:52567073-52567576 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr16:52611160-52612359 Neighboring gene uncharacterized LOC105371265 Neighboring gene cancer susceptibility 16 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr16:52662737-52663936 Neighboring gene tropomyosin 3 pseudogene Neighboring gene Sharpr-MPRA regulatory region 9242 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr16:52831610-52832809 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:52832941-52833466 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:52846552-52847751 Neighboring gene Sharpr-MPRA regulatory region 3100 Neighboring gene PHB1 pseudogene 21

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Identification of a Four Hypoxia-Associated Long Non-Coding RNA Signature and Establishment of a Nomogram Predicting Prognosis of Clear Cell Renal Cell Carcinoma. Chen H, et al. Front Oncol, 2021. PMID 34386428, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Clone Names

  • AC026462.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_184323.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026462

  2. NR_184324.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026462

  3. NR_184325.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026462

  4. NR_184326.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026462

  5. NR_184327.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026462

  6. NR_184328.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026462

  7. NR_184329.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026462

  8. NR_184330.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026462
    Related
    ENST00000660107.3

  9. NR_184331.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026462
    Related
    ENST00000564361.2

  10. NR_184332.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026462
    Related
    ENST00000659772.1

  11. NR_184333.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026462
    Related
    ENST00000660191.1

  12. NR_184334.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026462
    Related
    ENST00000655643.1

  13. NR_184335.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026462

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    52607060..52614771
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    58404935..58412648
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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