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PKD1-AS1 PKD1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105371049, updated on 10-Oct-2023

Summary

Official Symbol
PKD1-AS1provided by HGNC
Official Full Name
PKD1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:56035
See related
Ensembl:ENSG00000259933
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in colon (RPKM 5.9), fat (RPKM 4.4) and 25 other tissues See more
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Genomic context

See PKD1-AS1 in Genome Data Viewer
Location:
16p13.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (2091436..2095017)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (2111559..2115140)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (2141437..2145018)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7024 Neighboring gene TSC complex subunit 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:2119055-2119286 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:2128423-2129132 Neighboring gene microRNA 1225 Neighboring gene polycystin 1, transient receptor potential channel interacting Neighboring gene microRNA 6511b-1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:2173873-2174714 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:2175557-2176398 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10254 Neighboring gene microRNA 4516

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135175.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BM824397
    Related
    ENST00000570072.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    2091436..2095017
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    2111559..2115140
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)