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LINC02323 long intergenic non-protein coding RNA 2323 [ Homo sapiens (human) ]

Gene ID: 105370681, updated on 10-Oct-2023

Summary

Official Symbol
LINC02323provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2323provided by HGNC
Primary source
HGNC:HGNC:53242
See related
Ensembl:ENSG00000259230 AllianceGenome:HGNC:53242
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02323 in Genome Data Viewer
Location:
14q32.31
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (102545254..102555826)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (96781177..96791750)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (103011591..103022163)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9073 Neighboring gene uncharacterized LOC105370680 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6121 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:102995075-102995576 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6122 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6123 Neighboring gene microRNA 4309 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6124 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6125 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:103022683-103023183 Neighboring gene MPRA-validated peak2254 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9074 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:103036323-103036892 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:103039389-103040275 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:103040276-103041163 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:103045898-103046584 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:103046585-103047269 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:103050544-103051072 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9075 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:103057589-103058404 Neighboring gene RNA, 7SL, cytoplasmic 546, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6127 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9076 Neighboring gene REST corepressor 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:103119605-103120104 Neighboring gene ribosomal protein L23a pseudogene 11

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146561.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL136293
    Related
    ENST00000559946.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    102545254..102555826
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    96781177..96791750
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)