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LOC105344976 3-ketodihydrosphingosine reductase-like [ Magallana gigas (Pacific oyster) ]

Gene ID: 105344976, updated on 12-May-2024

Summary

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Gene symbol
LOC105344976
Gene description
3-ketodihydrosphingosine reductase-like
See related
EnsemblRapid:G20781
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Magallana gigas
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Magallana
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Genomic context

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See LOC105344976 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly LG Location
102 current cgigas_uk_roslin_v1 (GCF_902806645.1) 6 NC_047564.1 (10235213..10239612, complement)
101 previous assembly oyster_v9 (GCF_000297895.1) Unplaced Scaffold NW_011936984.1 (39287..48035)

Linkage Group 6 - NC_047564.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105344977 Neighboring gene ribonuclease P protein subunit p29 Neighboring gene uncharacterized LOC105344974 Neighboring gene transfer RNA glutamic acid (anticodon CUC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of genes involved in ceramide metabolism in the Pacific oyster (Crassostrea gigas). Timmins-Schiffman E, et al. BMC Res Notes, 2012 Sep 13. PMID 22974230, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3-dehydrosphinganine reductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 3-keto-sphinganine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
3-ketodihydrosphingosine reductase-like
Names
3-ketodihydrosphingosine reductase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001305361.1 → NP_001292290.1  3-ketodihydrosphingosine reductase-like precursor

    See identical proteins and their annotated locations for NP_001292290.1

    Status: PROVISIONAL

    Source sequence(s)
    JN315143
    UniProtKB/TrEMBL
    S4SCP5
    Related
    G20781.2
    Conserved Domains (2) summary
    cd08939
    Location:30 → 267
    KDSR-like_SDR_c; 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR
    pfam00106
    Location:32 → 228
    adh_short; short chain dehydrogenase

RefSeqs of Annotated Genomes: Crassostrea gigas Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference cgigas_uk_roslin_v1

Genomic

  1. NC_047564.1 Reference cgigas_uk_roslin_v1

    Range
    10235213..10239612 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases