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LOC105313442 uncharacterized LOC105313442 [ Amphimedon queenslandica ]

Gene ID: 105313442, updated on 7-Dec-2023

Summary

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Gene symbol
LOC105313442
Gene description
uncharacterized LOC105313442
See related
EnsemblRapid:LOC105313442
Gene type
protein coding
RefSeq status
MODEL
Organism
Amphimedon queenslandica
Lineage
Eukaryota; Metazoa; Porifera; Demospongiae; Heteroscleromorpha; Haplosclerida; Niphatidae; Amphimedon
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
102 current v1.0 (GCF_000090795.1) Unplaced Scaffold NW_003546460.1 (150071..151998, complement)

NW_003546460.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109583466 Neighboring gene bypass of stop codon protein 1-like Neighboring gene caspase-3-like Neighboring gene oxygen-dependent coproporphyrinogen-III oxidase-like Neighboring gene nicotinamide N-methyltransferase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003546460.1 Unplaced Scaffold Reference v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC105313442

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Amphimedon queenslandica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v1.0 Primary Assembly

Genomic

  1. NW_003546460.1 Reference v1.0 Primary Assembly

    Range
    150071..151998 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019998845.1 → XP_019854404.1  uncharacterized protein LOC105313442 isoform X2

    Related
    XP_019854404.1, XM_019998845.1
    Conserved Domains (2) summary
    smart00358
    Location:379 → 455
    DSRM; Double-stranded RNA binding motif
    pfam00656
    Location:19 → 236
    Peptidase_C14; Caspase domain

  2. XM_011406883.2 → XP_011405185.1  uncharacterized protein LOC105313442 isoform X1

    UniProtKB/TrEMBL
    A0A1X7UGT8
    Related
    XP_011405185.1, XM_011406883.2
    Conserved Domains (2) summary
    smart00358
    Location:380 → 456
    DSRM; Double-stranded RNA binding motif
    pfam00656
    Location:19 → 236
    Peptidase_C14; Caspase domain
Nucleotide Protein
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Gene LinkOut

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