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Hcs holocarboxylase synthetase-like protein [ Ooceraea biroi (clonal raider ant) ]

Gene ID: 105284641, updated on 23-May-2024

Summary

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Gene symbol
Hcs
Gene description
holocarboxylase synthetase-like protein
Locus tag
DMN91_009436
See related
EnsemblRapid:LOC105284641
Gene type
protein coding
RefSeq status
MODEL
Organism
Ooceraea biroi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Dorylinae; Ooceraea
Orthologs
fruit fly all
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Genomic context

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See Hcs in Genome Data Viewer
Location:
chromosome: 9
Exon count:
18
Annotation release Status Assembly Chr Location
100 current Obir_v5.4 (GCF_003672135.1) 9 NC_039514.1 (9297258..9307746, complement)

Chromosome 9 - NC_039514.1Genomic Context describing neighboring genes Neighboring gene proteasome assembly chaperone 2 Neighboring gene chloride channel protein 3 Neighboring gene ubiquinone biosynthesis protein COQ3, mitochondrial Neighboring gene probable H/ACA ribonucleoprotein complex subunit 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039514.1 Chromosome 9 Reference Obir_v5.4

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the clonal raider ant Cerapachys biroi. Oxley PR, et al. Curr Biol, 2014 Feb 17. PMID 24508170, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables biotin-[acetyl-CoA-carboxylase] ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein modification process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
biotin--protein ligase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ooceraea biroi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Obir_v5.4

Genomic

  1. NC_039514.1 Reference Obir_v5.4

    Range
    9297258..9307746 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026972259.1 → XP_026828060.1  biotin--protein ligase isoform X3

    UniProtKB/TrEMBL
    A0A3L8DGT5
    Related
    XP_026828060.1, XM_026972259.1
    Conserved Domains (1) summary
    COG0340
    Location:712 → 935
    BirA2; Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme transport and metabolism]

  2. XM_026972257.1 → XP_026828058.1  biotin--protein ligase isoform X1

    UniProtKB/TrEMBL
    A0A3L8DGT5
    Related
    XP_026828058.1, XM_026972257.1
    Conserved Domains (1) summary
    COG0340
    Location:722 → 945
    BirA2; Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme transport and metabolism]

  3. XM_026972260.1 → XP_026828061.1  biotin--protein ligase isoform X4

    UniProtKB/TrEMBL
    A0A3L8DGT5
    Related
    XP_026828061.1, XM_026972260.1
    Conserved Domains (1) summary
    COG0340
    Location:697 → 920
    BirA2; Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme transport and metabolism]

  4. XM_026972258.1 → XP_026828059.1  biotin--protein ligase isoform X2

    UniProtKB/TrEMBL
    A0A3L8DGT5
    Related
    XP_026828059.1, XM_026972258.1
    Conserved Domains (2) summary
    COG0340
    Location:716 → 939
    BirA2; Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme transport and metabolism]
    cl26619
    Location:265 → 381
    Myco_arth_vir_N; Mycoplasma virulence signal region (Myco_arth_vir_N)

  5. XM_026972261.1 → XP_026828062.1  biotin--protein ligase isoform X5

    UniProtKB/TrEMBL
    A0A3L8DGT5
    Related
    XP_026828062.1, XM_026972261.1
    Conserved Domains (1) summary
    COG0340
    Location:663 → 886
    BirA2; Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme transport and metabolism]
Nucleotide Protein
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Other Literature Sources
Molecular Biology Databases