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LOC105252818 E3 ubiquitin-protein ligase CHIP [ Camponotus floridanus (Florida carpenter ant) ]

Gene ID: 105252818, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105252818
Gene description
E3 ubiquitin-protein ligase CHIP
Locus tag
EAG_00707
See related
EnsemblRapid:LOC105252818
Gene type
protein coding
RefSeq status
MODEL
Organism
Camponotus floridanus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Formicinae; Camponotus
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current Cflo_v7.5 (GCF_003227725.1) Unplaced Scaffold NW_020229270.1 (2376779..2388919)
101 previous assembly CamFlo_1.0 (GCF_000147175.1) Unplaced Scaffold NW_011881947.1 (43764..45689, complement)

NW_020229270.1Genomic Context describing neighboring genes Neighboring gene T-lymphocyte activation antigen CD86 Neighboring gene uncharacterized LOC105252819 Neighboring gene sodium-dependent neutral amino acid transporter B(0)AT3 Neighboring gene uncharacterized LOC112637269 Neighboring gene uncharacterized LOC105252825 Neighboring gene ubiquitin-like-conjugating enzyme ATG3 Neighboring gene phospholipase A1 member A Neighboring gene putative odorant receptor 71a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic comparison of the ants Camponotus floridanus and Harpegnathos saltator. Bonasio R, et al. Science, 2010 Aug 27. PMID 20798317, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-folding chaperone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to misfolded protein IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein quality control for misfolded or incompletely synthesized proteins IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase CHIP
Names
STIP1-like proteiny and U box-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camponotus floridanus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cflo_v7.5

Genomic

  1. NW_020229270.1 Reference Cflo_v7.5

    Range
    2376779..2388919
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025406582.1 → XP_025262367.1  E3 ubiquitin-protein ligase CHIP isoform X2

    Related
    XP_025262367.1, XM_025406582.1
    Conserved Domains (3) summary
    sd00006
    Location:13 → 40
    TPR; TPR repeat [structural motif]
    cd16654
    Location:218 → 263
    RING-Ubox_CHIP; U-box domain, a modified RING finger, found in carboxyl terminus of HSP70-interacting protein (CHIP) and similar proteins
    cl26005
    Location:6 → 77
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional

  2. XM_011260405.3 → XP_011258707.1  E3 ubiquitin-protein ligase CHIP isoform X1

    See identical proteins and their annotated locations for XP_011258707.1

    UniProtKB/TrEMBL
    E2AIM8
    Related
    XP_011258707.1, XM_011260405.3
    Conserved Domains (3) summary
    pfam04564
    Location:218 → 290
    U-box; U-box domain
    sd00006
    Location:13 → 40
    TPR; TPR repeat [structural motif]
    pfam13414
    Location:13 → 77
    TPR_11; TPR repeat
Nucleotide Protein Strain
Heading Accession and Version

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