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LOC105194828 lysosomal acid glucosylceramidase [ Solenopsis invicta (red fire ant) ]

Gene ID: 105194828, updated on 7-Dec-2023

Summary

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Gene symbol
LOC105194828
Gene description
lysosomal acid glucosylceramidase
Locus tag
SINV_06838
Gene type
protein coding
RefSeq status
MODEL
Organism
Solenopsis invicta
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Solenopsis
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Genomic context

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Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
104 current UNIL_Sinv_3.0 (GCF_016802725.1) 1 NC_052664.1 (20873413..20905121, complement)
103 previous assembly Si_gnH (GCF_000188075.2) Unplaced Scaffold NW_020521535.1 (788983..796068, complement)

Chromosome 1 - NC_052664.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein CG5902 Neighboring gene uncharacterized LOC105194829 Neighboring gene venom acid phosphatase Acph-1 Neighboring gene upstream stimulatory factor 2 Neighboring gene uncharacterized LOC105194767

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative transcriptomics reveals the conserved building blocks involved in parallel evolution of diverse phenotypic traits in ants. Morandin C, et al. Genome Biol, 2016 Mar 7. PMID 26951146, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucosylceramidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucosylceramide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysosomal acid glucosylceramidase
Names
glucosylceramidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solenopsis invicta Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UNIL_Sinv_3.0

Genomic

  1. NC_052664.1 Reference UNIL_Sinv_3.0

    Range
    20873413..20905121 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039451701.1 → XP_039307635.1  lysosomal acid glucosylceramidase isoform X4

    Conserved Domains (2) summary
    pfam17189
    Location:514 → 576
    Glyco_hydro_30C; Glycosyl hydrolase family 30 beta sandwich domain
    cl23815
    Location:166 → 511
    Glyco_hydro_30; Glycosyl hydrolase family 30 TIM-barrel domain

  2. XM_039451704.1 → XP_039307638.1  lysosomal acid glucosylceramidase isoform X5

    Conserved Domains (2) summary
    pfam17189
    Location:496 → 558
    Glyco_hydro_30C; Glycosyl hydrolase family 30 beta sandwich domain
    cl23815
    Location:148 → 493
    Glyco_hydro_30; Glycosyl hydrolase family 30 TIM-barrel domain

  3. XM_039451700.1 → XP_039307634.1  lysosomal acid glucosylceramidase isoform X3

    Conserved Domains (2) summary
    pfam17189
    Location:543 → 605
    Glyco_hydro_30C; Glycosyl hydrolase family 30 beta sandwich domain
    cl23815
    Location:195 → 540
    Glyco_hydro_30; Glycosyl hydrolase family 30 TIM-barrel domain

  4. XM_039451690.1 → XP_039307624.1  lysosomal acid glucosylceramidase isoform X1

    Conserved Domains (2) summary
    pfam17189
    Location:582 → 644
    Glyco_hydro_30C; Glycosyl hydrolase family 30 beta sandwich domain
    cl23815
    Location:234 → 579
    Glyco_hydro_30; Glycosyl hydrolase family 30 TIM-barrel domain

  5. XM_039451694.1 → XP_039307628.1  lysosomal acid glucosylceramidase isoform X2

    Conserved Domains (2) summary
    pfam17189
    Location:546 → 608
    Glyco_hydro_30C; Glycosyl hydrolase family 30 beta sandwich domain
    cl23815
    Location:198 → 543
    Glyco_hydro_30; Glycosyl hydrolase family 30 TIM-barrel domain
Nucleotide Protein
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