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LOC105157654 malonate--CoA ligase [ Sesamum indicum (sesame) ]

Gene ID: 105157654, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105157654
Gene description
malonate--CoA ligase
Gene type
protein coding
RefSeq status
MODEL
Organism
Sesamum indicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Genomic context

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See LOC105157654 in Genome Data Viewer
Location:
chromosome: LG3
Exon count:
17
Annotation release Status Assembly LG Location
101 current S_indicum_v1.0 (GCF_000512975.1) LG3 NC_026147.1 (8117326..8124936)

Linkage Group LG3 - NC_026147.1Genomic Context describing neighboring genes Neighboring gene protein PLANT CADMIUM RESISTANCE 8-like Neighboring gene protein PLANT CADMIUM RESISTANCE 8-like Neighboring gene protein NRT1/ PTR FAMILY 1.2 Neighboring gene transcription factor bHLH68

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026147.1 Chromosome LG3 Reference S_indicum_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers. Wei W, et al. BMC Genomics, 2011 Sep 19. PMID 21929789, Free PMC Article
  2. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables medium-chain fatty acid-CoA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
malonate--CoA ligase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S_indicum_v1.0 Primary Assembly

Genomic

  1. NC_026147.1 Reference S_indicum_v1.0 Primary Assembly

    Range
    8117326..8124936
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011074083.2 → XP_011072385.1  malonate--CoA ligase

    UniProtKB/TrEMBL
    A0A6I9SXL6
    Conserved Domains (2) summary
    cd05941
    Location:84 → 609
    MCS; Malonyl-CoA synthetase (MCS)
    COG0318
    Location:63 → 618
    CaiC; Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Lipid transport and metabolism, Secondary metabolites biosynthesis, transport and catabolism]
Nucleotide Protein
Heading Accession and Version

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