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LOC105044809 superoxide dismutase [Mn], mitochondrial-like [ Elaeis guineensis (African oil palm) ]

Gene ID: 105044809, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105044809
Gene description
superoxide dismutase [Mn], mitochondrial-like
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Elaeis guineensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Also known as
MnSOD
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Genomic context

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Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
102 current EG5 (GCF_000442705.1) 5 NC_025997.1 (7143683..7149131, complement)

Chromosome 5 - NC_025997.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105044806 Neighboring gene uncharacterized LOC105044808 Neighboring gene protein DETOXIFICATION 53 Neighboring gene UDP-xylose transporter 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_025997.1 Chromosome 5 Reference EG5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables superoxide dismutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in superoxide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
superoxide dismutase [Mn], mitochondrial-like
Names
manganese superoxide dismutase
NP_001306839.1
XP_019705854.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001319910.1 → NP_001306839.1  superoxide dismutase [Mn], mitochondrial-like precursor

    Status: PROVISIONAL

    Source sequence(s)
    JX438715
    UniProtKB/TrEMBL
    K0A0L0
    Conserved Domains (3) summary
    PLN02471
    Location:1 → 244
    PLN02471; superoxide dismutase [Mn]
    pfam00081
    Location:43 → 124
    Sod_Fe_N; Iron/manganese superoxide dismutases, alpha-hairpin domain
    pfam02777
    Location:134 → 237
    Sod_Fe_C; Iron/manganese superoxide dismutases, C-terminal domain

RefSeqs of Annotated Genomes: Elaeis guineensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EG5 Primary Assembly

Genomic

  1. NC_025997.1 Reference EG5 Primary Assembly

    Range
    7143683..7149131 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019850295.2 → XP_019705854.1  superoxide dismutase [Mn], mitochondrial-like isoform X1

    UniProtKB/TrEMBL
    A0A6J0PHZ0
    Conserved Domains (1) summary
    cl27368
    Location:1 → 188
    Sod_Fe_C; Iron/manganese superoxide dismutases, C-terminal domain
Nucleotide Protein
Heading Accession and Version

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