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LOC105041877 nuclear transcription factor Y subunit A-4 [ Elaeis guineensis (African oil palm) ]

Gene ID: 105041877, updated on 21-Dec-2023

Summary

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Gene symbol
LOC105041877
Gene description
nuclear transcription factor Y subunit A-4
Gene type
protein coding
RefSeq status
MODEL
Organism
Elaeis guineensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Genomic context

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See LOC105041877 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
102 current EG5 (GCF_000442705.1) 3 NC_025995.1 (32639908..32666441)

Chromosome 3 - NC_025995.1Genomic Context describing neighboring genes Neighboring gene alpha/beta hydrolase domain-containing protein WAV2 Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC105041878 Neighboring gene transmembrane protein 45A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_025995.1 Chromosome 3 Reference EG5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCAAT-binding factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear transcription factor Y subunit A-3; nuclear transcription factor Y subunit A-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Elaeis guineensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EG5 Primary Assembly

Genomic

  1. NC_025995.1 Reference EG5 Primary Assembly

    Range
    32639908..32666441
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010918938.3 → XP_010917240.1  nuclear transcription factor Y subunit A-4 isoform X1

    See identical proteins and their annotated locations for XP_010917240.1

    UniProtKB/TrEMBL
    A0A6I9QY45
    Conserved Domains (1) summary
    smart00521
    Location:183 → 243
    CBF; CCAAT-Binding transcription Factor

  2. XM_029263585.1 → XP_029119418.1  nuclear transcription factor Y subunit A-4 isoform X1

    UniProtKB/TrEMBL
    A0A6I9QY45
    Conserved Domains (1) summary
    smart00521
    Location:183 → 243
    CBF; CCAAT-Binding transcription Factor

  3. XM_029263584.1 → XP_029119417.1  nuclear transcription factor Y subunit A-4 isoform X1

    UniProtKB/TrEMBL
    A0A6I9QY45
    Conserved Domains (1) summary
    smart00521
    Location:183 → 243
    CBF; CCAAT-Binding transcription Factor

  4. XM_029263589.1 → XP_029119422.1  nuclear transcription factor Y subunit A-3 isoform X2

    UniProtKB/TrEMBL
    A0A8N4EWQ0
    Conserved Domains (1) summary
    smart00521
    Location:177 → 237
    CBF; CCAAT-Binding transcription Factor

  5. XM_029263587.1 → XP_029119420.1  nuclear transcription factor Y subunit A-4 isoform X1

    UniProtKB/TrEMBL
    A0A6I9QY45
    Conserved Domains (1) summary
    smart00521
    Location:183 → 243
    CBF; CCAAT-Binding transcription Factor

  6. XM_029263588.1 → XP_029119421.1  nuclear transcription factor Y subunit A-4 isoform X1

    UniProtKB/TrEMBL
    A0A6I9QY45
    Conserved Domains (1) summary
    smart00521
    Location:183 → 243
    CBF; CCAAT-Binding transcription Factor

  7. XM_029263586.1 → XP_029119419.1  nuclear transcription factor Y subunit A-4 isoform X1

    UniProtKB/TrEMBL
    A0A6I9QY45
    Conserved Domains (1) summary
    smart00521
    Location:183 → 243
    CBF; CCAAT-Binding transcription Factor
Nucleotide Protein
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