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MYB12 transcription factor MYB12 [ Beta vulgaris subsp. vulgaris ]

Gene ID: 104894741, updated on 19-Jun-2023

Summary

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Gene symbol
MYB12
Gene description
transcription factor MYB12
Locus tag
BVRB_5g121510
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Beta vulgaris subsp. vulgaris (sub-species: vulgaris)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_06 current EL10.2 (GCF_026745355.1) 5 NC_079206.1 (66718359..66724796, complement)
102 previous assembly EL10_1.0 (GCF_002917755.1) Unplaced Scaffold NW_026017083.1 (379843..386299, complement)

Chromosome 5 - NC_079206.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene berberine bridge enzyme-like 22 Neighboring gene dnaJ protein ERDJ3B Neighboring gene uncharacterized LOC104894846

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet (Beta vulgaris). Stracke R, et al. BMC Plant Biol, 2014 Sep 25. PMID 25249410, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
transcription factor MYB12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001303064.1 → NP_001289993.1  transcription factor MYB12

    See identical proteins and their annotated locations for NP_001289993.1

    Status: PROVISIONAL

    Source sequence(s)
    KJ707238
    UniProtKB/TrEMBL
    A0A096ZXF2
    Conserved Domains (3) summary
    smart00717
    Location:14 → 63
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:80 → 112
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    pfam00249
    Location:14 → 61
    Myb_DNA-binding; Myb-like DNA-binding domain

RefSeqs of Annotated Genomes: GCF_026745355.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EL10.2 Primary Assembly

Genomic

  1. NC_079206.1 Reference EL10.2 Primary Assembly

    Range
    66718359..66724796 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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