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LOC104888158 acidic endochitinase SE2 [ Beta vulgaris subsp. vulgaris ]

Gene ID: 104888158, updated on 9-Nov-2023

Summary

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Gene symbol
LOC104888158
Gene description
acidic endochitinase SE2
Locus tag
BVRB_3g051020
Gene type
protein coding
RefSeq status
MODEL
Organism
Beta vulgaris subsp. vulgaris (sub-species: vulgaris)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Genomic context

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See LOC104888158 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_06 current EL10.2 (GCF_026745355.1) 3 NC_079204.1 (3153676..3154961, complement)
102 previous assembly EL10_1.0 (GCF_002917755.1) 3 NC_064019.1 (3123129..3124216, complement)

Chromosome 3 - NC_079204.1Genomic Context describing neighboring genes Neighboring gene protein TRANSPARENT TESTA GLABRA 1 Neighboring gene bZIP transcription factor 11 Neighboring gene uncharacterized LOC104888156 Neighboring gene hypothetical protein Neighboring gene NDR1/HIN1-like protein 26 Neighboring gene two-component response regulator-like APRR5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acidic endochitinase SE2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026745355.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EL10.2 Primary Assembly

Genomic

  1. NC_079204.1 Reference EL10.2 Primary Assembly

    Range
    3153676..3154961 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010673039.4 → XP_010671341.1  acidic endochitinase SE2

    See identical proteins and their annotated locations for XP_010671341.1

    UniProtKB/Swiss-Prot
    P36910
    UniProtKB/TrEMBL
    A0A0J8CWK9
    Conserved Domains (2) summary
    cd02877
    Location:26 → 291
    GH18_hevamine_XipI_class_III; This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that ...
    pfam00704
    Location:27 → 292
    Glyco_hydro_18; Glycosyl hydrolases family 18
Nucleotide Protein
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