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Rad54b RAD54 homolog B [ Fukomys damarensis (Damara mole-rat) ]

Gene ID: 104859167, updated on 12-Mar-2024

Summary

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Gene symbol
Rad54b
Gene description
RAD54 homolog B
Locus tag
H920_03406
See related
Ensembl:ENSFDAG00000020541
Gene type
protein coding
RefSeq status
MODEL
Organism
Fukomys damarensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900917.1 (20242808..20335113)
101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011044462.1 (15896058..15988361)

NW_022900917.1Genomic Context describing neighboring genes Neighboring gene epithelial splicing regulatory protein 1 Neighboring gene vir like m6A methyltransferase associated Neighboring gene U6 spliceosomal RNA Neighboring gene fibrinogen silencer binding protein Neighboring gene leucine-rich repeat and IQ domain-containing protein 3-like Neighboring gene GTP binding protein overexpressed in skeletal muscle Neighboring gene cadherin 17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA translocase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in reciprocal meiotic recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA repair and recombination protein RAD54B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DMR_v1.0_HiC Primary Assembly

Genomic

  1. NW_022900917.1 Reference DMR_v1.0_HiC Primary Assembly

    Range
    20242808..20335113
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033760090.1 → XP_033615981.1  DNA repair and recombination protein RAD54B isoform X1

    UniProtKB/TrEMBL
    A0A091EIH8
    Conserved Domains (2) summary
    COG0553
    Location:296 → 815
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd18066
    Location:296 → 530
    DEXHc_RAD54B; DEXH-box helicase domain of RAD54B

  2. XM_033760085.1 → XP_033615976.1  DNA repair and recombination protein RAD54B isoform X1

    UniProtKB/TrEMBL
    A0A091EIH8
    Conserved Domains (2) summary
    COG0553
    Location:296 → 815
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd18066
    Location:296 → 530
    DEXHc_RAD54B; DEXH-box helicase domain of RAD54B

  3. XM_010619671.2 → XP_010617973.1  DNA repair and recombination protein RAD54B isoform X1

    UniProtKB/TrEMBL
    A0A091EIH8
    Related
    ENSFDAP00000013209.1
    Conserved Domains (2) summary
    COG0553
    Location:296 → 815
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd18066
    Location:296 → 530
    DEXHc_RAD54B; DEXH-box helicase domain of RAD54B

  4. XM_033760089.1 → XP_033615980.1  DNA repair and recombination protein RAD54B isoform X1

    UniProtKB/TrEMBL
    A0A091EIH8
    Conserved Domains (2) summary
    COG0553
    Location:296 → 815
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd18066
    Location:296 → 530
    DEXHc_RAD54B; DEXH-box helicase domain of RAD54B

  5. XM_033760082.1 → XP_033615973.1  DNA repair and recombination protein RAD54B isoform X1

    UniProtKB/TrEMBL
    A0A091EIH8
    Conserved Domains (2) summary
    COG0553
    Location:296 → 815
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd18066
    Location:296 → 530
    DEXHc_RAD54B; DEXH-box helicase domain of RAD54B

  6. XM_033760099.1 → XP_033615990.1  DNA repair and recombination protein RAD54B isoform X3

    UniProtKB/TrEMBL
    A0A091EIH8
    Conserved Domains (2) summary
    COG0553
    Location:202 → 721
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd18066
    Location:202 → 436
    DEXHc_RAD54B; DEXH-box helicase domain of RAD54B

  7. XM_033760098.1 → XP_033615989.1  DNA repair and recombination protein RAD54B isoform X2

    UniProtKB/TrEMBL
    A0A091EIH8
    Conserved Domains (2) summary
    COG0553
    Location:296 → 815
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd18066
    Location:296 → 530
    DEXHc_RAD54B; DEXH-box helicase domain of RAD54B

  8. XM_033760097.1 → XP_033615988.1  DNA repair and recombination protein RAD54B isoform X1

    UniProtKB/TrEMBL
    A0A091EIH8
    Conserved Domains (2) summary
    COG0553
    Location:296 → 815
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd18066
    Location:296 → 530
    DEXHc_RAD54B; DEXH-box helicase domain of RAD54B
Nucleotide Protein
Heading Accession and Version

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