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Tecpr2 tectonin beta-propeller repeat containing 2 [ Mus musculus (house mouse) ]

Gene ID: 104859, updated on 12-Aug-2019

Summary

Official Symbol
Tecpr2provided by MGI
Official Full Name
tectonin beta-propeller repeat containing 2provided by MGI
Primary source
MGI:MGI:2144865
See related
Ensembl:ENSMUSG00000021275
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AI604920; mKIAA0297; 4930573I19Rik
Expression
Ubiquitous expression in cortex adult (RPKM 8.0), frontal lobe adult (RPKM 6.5) and 28 other tissues See more
Orthologs

Genomic context

See Tecpr2 in Genome Data Viewer
Location:
12; 12 F1
Exon count:
23
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (110889243..110972394)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (112127474..112210604)

Chromosome 12 - NC_000078.6Genomic Context describing neighboring genes Neighboring gene zinc finger protein 839 Neighboring gene mitochondrial pyruvate carrier 1, pseudogene Neighboring gene cyclin-dependent kinase 2 interacting protein Neighboring gene ribosomal protein S19, pseudogene 6 Neighboring gene uncharacterized LOC115487953 Neighboring gene ankyrin repeat domain 9

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
tectonin beta-propeller repeat-containing protein 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081057.2NP_001074526.1  tectonin beta-propeller repeat-containing protein 2 isoform 1

    See identical proteins and their annotated locations for NP_001074526.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes isoform 1. Variants 1 and 2 both encode isoform 1.
    Source sequence(s)
    AC101875, AC153152
    Consensus CDS
    CCDS36562.1
    UniProtKB/TrEMBL
    Q3UH45
    Related
    ENSMUSP00000126749.1, ENSMUST00000169597.8
    Conserved Domains (4) summary
    smart00706
    Location:13601392
    TECPR; Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins
    COG2319
    Location:36380
    WD40; WD40 repeat [General function prediction only]
    pfam06462
    Location:12941322
    Hyd_WA; Propeller
    sd00039
    Location:3773
    7WD40; WD40 repeat [structural motif]
  2. NM_001289510.1NP_001276439.1  tectonin beta-propeller repeat-containing protein 2 isoform 1

    See identical proteins and their annotated locations for NP_001276439.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1 and 2 both encode isoform 1.
    Source sequence(s)
    AK029810, AK147592, AW488496
    Consensus CDS
    CCDS36562.1
    UniProtKB/TrEMBL
    Q3UH45, Q8CDN4
    Related
    ENSMUSP00000127949.1, ENSMUST00000165978.2
    Conserved Domains (4) summary
    smart00706
    Location:13601392
    TECPR; Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins
    COG2319
    Location:36380
    WD40; WD40 repeat [General function prediction only]
    pfam06462
    Location:12941322
    Hyd_WA; Propeller
    sd00039
    Location:3773
    7WD40; WD40 repeat [structural motif]
  3. NM_175336.3NP_780545.2  tectonin beta-propeller repeat-containing protein 2 isoform 2

    See identical proteins and their annotated locations for NP_780545.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate splice site in the 5' coding region that results in use of a downstream translation start. The encoded protein (isoform 2) has a shorter and distinct N-terminus, compared to isoform 1.
    Source sequence(s)
    AC101875, AK029810, AW488496, BC145250, CV557670
    UniProtKB/TrEMBL
    Q8CDN4
    Conserved Domains (2) summary
    smart00706
    Location:9931025
    TECPR; Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins
    pfam06462
    Location:927955
    Hyd_WA; Propeller

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000078.6 Reference GRCm38.p6 C57BL/6J

    Range
    110889243..110972394
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006515352.3XP_006515415.1  tectonin beta-propeller repeat-containing protein 2 isoform X1

    See identical proteins and their annotated locations for XP_006515415.1

    UniProtKB/TrEMBL
    Q3UH45
    Conserved Domains (4) summary
    smart00706
    Location:13601392
    TECPR; Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins
    COG2319
    Location:36380
    WD40; WD40 repeat [General function prediction only]
    pfam06462
    Location:12941322
    Hyd_WA; Propeller
    sd00039
    Location:3773
    7WD40; WD40 repeat [structural motif]
  2. XM_006515356.3XP_006515419.1  tectonin beta-propeller repeat-containing protein 2 isoform X3

    See identical proteins and their annotated locations for XP_006515419.1

    Conserved Domains (2) summary
    smart00706
    Location:9931025
    TECPR; Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins
    pfam06462
    Location:927955
    Hyd_WA; Propeller
  3. XM_006515353.4XP_006515416.1  tectonin beta-propeller repeat-containing protein 2 isoform X1

    See identical proteins and their annotated locations for XP_006515416.1

    UniProtKB/TrEMBL
    Q3UH45
    Conserved Domains (4) summary
    smart00706
    Location:13601392
    TECPR; Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins
    COG2319
    Location:36380
    WD40; WD40 repeat [General function prediction only]
    pfam06462
    Location:12941322
    Hyd_WA; Propeller
    sd00039
    Location:3773
    7WD40; WD40 repeat [structural motif]
  4. XM_006515354.4XP_006515417.1  tectonin beta-propeller repeat-containing protein 2 isoform X2

    Conserved Domains (2) summary
    smart00706
    Location:12211253
    TECPR; Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins
    pfam06462
    Location:11551183
    Hyd_WA; Propeller
  5. XM_006515351.4XP_006515414.1  tectonin beta-propeller repeat-containing protein 2 isoform X1

    See identical proteins and their annotated locations for XP_006515414.1

    UniProtKB/TrEMBL
    Q3UH45
    Conserved Domains (4) summary
    smart00706
    Location:13601392
    TECPR; Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins
    COG2319
    Location:36380
    WD40; WD40 repeat [General function prediction only]
    pfam06462
    Location:12941322
    Hyd_WA; Propeller
    sd00039
    Location:3773
    7WD40; WD40 repeat [structural motif]
  6. XM_017314931.2XP_017170420.1  tectonin beta-propeller repeat-containing protein 2 isoform X2

    Conserved Domains (2) summary
    smart00706
    Location:12211253
    TECPR; Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins
    pfam06462
    Location:11551183
    Hyd_WA; Propeller
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