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MIR9-1HG MIR9-1 host gene [ Homo sapiens (human) ]

Gene ID: 10485, updated on 19-Jul-2022

Summary

Official Symbol
MIR9-1HGprovided by HGNC
Official Full Name
MIR9-1 host geneprovided by HGNC
Primary source
HGNC:HGNC:30780
See related
Ensembl:ENSG00000125462 MIM:618747; AllianceGenome:HGNC:30780
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CROC4; C1orf61
Summary
Involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward brain (RPKM 43.3) See more
Orthologs
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Genomic context

See MIR9-1HG in Genome Data Viewer
Location:
1q22
Exon count:
12
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (156404252..156429548, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (155542856..155568152, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (156374044..156399340, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 198 Neighboring gene CRISPRi-validated cis-regulatory element chr1.9068 Neighboring gene microRNA 9-1 Neighboring gene myocyte enhancer factor 2D Neighboring gene small nucleolar RNA U13 Neighboring gene IQ motif containing GTPase activating protein 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Other Names

  • contingent replication of cDNA 4
  • protein CROC-4
  • transcriptional activator of the c-fos promoter

Clone Names

  • FLJ38303

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus TAS
Traceable Author Statement
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135260.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI264870, BI667681, U49857
    Related
    ENST00000497824.5
  2. NR_135261.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI264870, AL139130, BC010558, BG716287
    Related
    ENST00000703052.1
  3. NR_135262.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI264870, BC010558, BG716287, BI597719
  4. NR_135263.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI264870, BC010558, BG716287, BI668594
    Related
    ENST00000310027.10
  5. NR_135264.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI264870, BC010558, HY158402, U49857
    Related
    ENST00000357975.5
  6. NR_135265.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI264870, AL139130, DB534652, HY121703
    Related
    ENST00000465270.6
  7. NR_135266.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI264870, AL139130, DB534652, HY137784
  8. NR_135267.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI264870, AL139130, DB534652, HY152089
    Related
    ENST00000497822.6
  9. NR_135268.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI264870, AL139130, BI752228, DB534652, HY152089
  10. NR_168070.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139130
    Related
    ENST00000368243.7
  11. NR_168071.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139130
    Related
    ENST00000702128.1
  12. NR_168072.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139130
    Related
    ENST00000701195.1
  13. NR_168073.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139130
    Related
    ENST00000486517.5

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    156404252..156429548 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791758.1 Reference GRCh38.p14 PATCHES

    Range
    4968..15892 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007069446.1 RNA Sequence

  2. XR_007069444.1 RNA Sequence

  3. XR_007069447.1 RNA Sequence

  4. XR_007069445.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    155542856..155568152 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001320453.1: Suppressed sequence

    Description
    NM_001320453.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  2. NM_001320454.2: Suppressed sequence

    Description
    NM_001320454.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  3. NM_001320455.2: Suppressed sequence

    Description
    NM_001320455.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  4. NM_006365.3: Suppressed sequence

    Description
    NM_006365.3: This RefSeq was removed because it is now thought that this gene does not encode a protein.