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LOC104819457 allene oxide synthase 1, chloroplastic-like [ Tarenaya hassleriana ]

Gene ID: 104819457, updated on 21-Dec-2023

Summary

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Gene symbol
LOC104819457
Gene description
allene oxide synthase 1, chloroplastic-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Tarenaya hassleriana
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; New World clade; Tarenaya
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Genomic context

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See LOC104819457 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current ASM46358v1 (GCF_000463585.1) Unplaced Scaffold NW_010966177.1 (5045525..5047631, complement)

NW_010966177.1Genomic Context describing neighboring genes Neighboring gene suppressor of mec-8 and unc-52 protein homolog 2 Neighboring gene embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein Neighboring gene cell division cycle 20.1, cofactor of APC complex-like Neighboring gene agamous-like MADS-box protein AGL97

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010966177.1 Unplaced Scaffold Reference ASM46358v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables monooxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in jasmonic acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sterol metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in chloroplast thylakoid membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
allene oxide synthase 1, chloroplastic-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tarenaya hassleriana Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM46358v1

Genomic

  1. NW_010966177.1 Reference ASM46358v1

    Range
    5045525..5047631 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010549533.2 → XP_010547835.1  allene oxide synthase 1, chloroplastic-like isoform X2

    See identical proteins and their annotated locations for XP_010547835.1

    Conserved Domains (1) summary
    PLN02648
    Location:49 → 522
    PLN02648; allene oxide synthase

  2. XM_010549532.2 → XP_010547834.1  allene oxide synthase 1, chloroplastic-like isoform X1

    See identical proteins and their annotated locations for XP_010547834.1

    Conserved Domains (1) summary
    PLN02648
    Location:49 → 522
    PLN02648; allene oxide synthase
Nucleotide Protein
Heading Accession and Version

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