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LOC104718952 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2-like [ Camelina sativa (false flax) ]

Gene ID: 104718952, updated on 9-Nov-2023

Summary

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Gene symbol
LOC104718952
Gene description
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Camelina sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Genomic context

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See LOC104718952 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Cs (GCF_000633955.1) 10 NC_025694.1 (14627174..14629066)

Chromosome 10 - NC_025694.1Genomic Context describing neighboring genes Neighboring gene protein TIFY 4B-like Neighboring gene protein TIFY 4B Neighboring gene protein TIFY 4A-like Neighboring gene 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_025694.1 Chromosome 10 Reference Cs

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly and characterization of Camelina sativa transcriptome by paired-end sequencing. Liang C, et al. BMC Genomics, 2013 Mar 5. PMID 23496985, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acireductone dioxygenase [iron(II)-requiring] activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-methionine salvage from methylthioadenosine IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camelina sativa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cs

Genomic

  1. NC_025694.1 Reference Cs

    Range
    14627174..14629066
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010436779.1 → XP_010435081.1  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2-like

    Conserved Domains (1) summary
    pfam03079
    Location:14 → 168
    ARD; ARD/ARD' family
Nucleotide Protein
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