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SLC30A9 solute carrier family 30 member 9 [ Homo sapiens (human) ]

Gene ID: 10463, updated on 12-Oct-2019

Summary

Official Symbol
SLC30A9provided by HGNC
Official Full Name
solute carrier family 30 member 9provided by HGNC
Primary source
HGNC:HGNC:1329
See related
Ensembl:ENSG00000014824 MIM:604604
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HUEL; ZNT9; GAC63; C4orf1; BILAPES
Expression
Ubiquitous expression in kidney (RPKM 32.5), brain (RPKM 27.2) and 25 other tissues See more
Orthologs

Genomic context

See SLC30A9 in Genome Data Viewer
Location:
4p13
Exon count:
18
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 4 NC_000004.12 (41990502..42090461)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (41992516..42089551)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374426 Neighboring gene transmembrane protein 33 Neighboring gene DDB1 and CUL4 associated factor 4 like 1 Neighboring gene ATPase Na+/K+ transporting subunit beta 1 pseudogene 1 Neighboring gene VISTA enhancer hs847 Neighboring gene BEN domain containing 4 Neighboring gene uncharacterized LOC105374428 Neighboring gene Sharpr-MPRA regulatory region 13490

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from BioSystems

  • Zinc homeostasis, organism-specific biosystem (from WikiPathways)
    Zinc homeostasis, organism-specific biosystemZinc is a transition metal and catalytic cofactor involved in many biological processes such as proliferation, development and differentiation, regulation of DNA synthesis, genomic stability, cell ac...

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA-binding transcription factor activity NAS
Non-traceable Author Statement
more info
PubMed 
DNA-binding transcription factor activity, RNA polymerase II-specific ISM
Inferred from Sequence Model
more info
PubMed 
cation transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 
chromatin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nuclear receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nuclear receptor transcription coactivator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
cation transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
cellular zinc ion homeostasis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cellular zinc ion homeostasis IMP
Inferred from Mutant Phenotype
more info
PubMed 
nucleotide-excision repair TAS
Traceable Author Statement
more info
PubMed 
positive regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
zinc ion transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
zinc ion transport IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cell IEA
Inferred from Electronic Annotation
more info
 
cytoplasmic vesicle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasmic vesicle IDA
Inferred from Direct Assay
more info
PubMed 
cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoskeleton IDA
Inferred from Direct Assay
more info
PubMed 
endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
endoplasmic reticulum IDA
Inferred from Direct Assay
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
zinc transporter 9
Names
GRIP1-dependent nuclear receptor coactivator
expressed in human embryonic lung
human embryonic lung protein
solute carrier family 30 (zinc transporter), member 9
znT-9

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_006345.4NP_006336.3  zinc transporter 9

    See identical proteins and their annotated locations for NP_006336.3

    Status: VALIDATED

    Source sequence(s)
    AA427879, AC113151, AY594282, BC007732, BC022981, BG323207
    Consensus CDS
    CCDS3465.1
    UniProtKB/Swiss-Prot
    Q6PML9
    UniProtKB/TrEMBL
    A0A0S2Z514
    Related
    ENSP00000264451.6, ENST00000264451.12
    Conserved Domains (3) summary
    TIGR00598
    Location:124216
    rad14; DNA repair protein
    TIGR01297
    Location:254522
    CDF; cation diffusion facilitator family transporter
    pfam01545
    Location:251450
    Cation_efflux; Cation efflux family

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p13 Primary Assembly

    Range
    41990502..42090461
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017007654.2XP_016863143.1  zinc transporter 9 isoform X1

RNA

  1. XR_001741095.2 RNA Sequence

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