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LOC104610923 reactive Intermediate Deaminase A, chloroplastic [ Nelumbo nucifera (sacred lotus) ]

Gene ID: 104610923, updated on 21-Dec-2023

Summary

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Gene symbol
LOC104610923
Gene description
reactive Intermediate Deaminase A, chloroplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Nelumbo nucifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Proteales; Nelumbonaceae; Nelumbo
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Chinese Lotus 1.1 (GCF_000365185.1) Unplaced Scaffold NW_010729176.1 (1398578..1403814, complement)

NW_010729176.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104610921 Neighboring gene ubiquitin thioesterase OTU1 Neighboring gene uncharacterized LOC104610925 Neighboring gene pre-mRNA-splicing factor CWC21-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010729176.1 Unplaced Scaffold Reference Chinese Lotus 1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in organonitrogen compound catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
reactive Intermediate Deaminase A, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nelumbo nucifera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Chinese Lotus 1.1 Primary Assembly

Genomic

  1. NW_010729176.1 Reference Chinese Lotus 1.1 Primary Assembly

    Range
    1398578..1403814 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010277782.2 → XP_010276084.1  reactive Intermediate Deaminase A, chloroplastic isoform X1

    UniProtKB/TrEMBL
    A0A1U8B8W5
    Conserved Domains (1) summary
    TIGR00004
    Location:64 → 225
    TIGR00004; reactive intermediate/imine deaminase

  2. XM_010277784.2 → XP_010276086.1  reactive Intermediate Deaminase A, chloroplastic isoform X3

    UniProtKB/TrEMBL
    A0A1U8B5D3
    Conserved Domains (1) summary
    TIGR00004
    Location:64 → 187
    TIGR00004; reactive intermediate/imine deaminase

  3. XM_010277783.2 → XP_010276085.1  reactive Intermediate Deaminase A, chloroplastic isoform X2

    UniProtKB/TrEMBL
    A0A1U8B573
    Conserved Domains (1) summary
    cl10015
    Location:64 → 157
    YjgF_YER057c_UK114_family; YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no ...
Nucleotide Protein
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