U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC104609078 valine--tRNA ligase, mitochondrial 1 [ Nelumbo nucifera (sacred lotus) ]

Gene ID: 104609078, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC104609078
Gene description
valine--tRNA ligase, mitochondrial 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Nelumbo nucifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Proteales; Nelumbonaceae; Nelumbo
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC104609078 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
101 current Chinese Lotus 1.1 (GCF_000365185.1) Unplaced Scaffold NW_010729155.1 (2227845..2263682)

NW_010729155.1Genomic Context describing neighboring genes Neighboring gene probable sarcosine oxidase Neighboring gene beta-glucuronosyltransferase GlcAT14A-like Neighboring gene B-box zinc finger protein 32-like Neighboring gene centromere-associated protein E

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_010729155.1 Unplaced Scaffold Reference Chinese Lotus 1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables aminoacyl-tRNA editing activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables valine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in valyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
valine--tRNA ligase, mitochondrial 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Nelumbo nucifera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Chinese Lotus 1.1 Primary Assembly

Genomic

  1. NW_010729155.1 Reference Chinese Lotus 1.1 Primary Assembly

    Range
    2227845..2263682
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010275291.2 → XP_010273593.1  valine--tRNA ligase, mitochondrial 1

    UniProtKB/TrEMBL
    A0A1U8AZ09
    Conserved Domains (5) summary
    cd07962
    Location:719 → 858
    Anticodon_Ia_Val; Anticodon-binding domain of valyl tRNA synthetases
    cd00817
    Location:116 → 719
    ValRS_core; catalytic core domain of valyl-tRNA synthetases
    PLN02381
    Location:39 → 1051
    PLN02381; valyl-tRNA synthetase
    pfam10458
    Location:981 → 1046
    Val_tRNA-synt_C; Valyl tRNA synthetase tRNA binding arm
    pfam13603
    Location:299 → 425
    tRNA-synt_1_2; Leucyl-tRNA synthetase, Domain 2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases