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LOC104595175 riboflavin biosynthesis protein PYRD, chloroplastic [ Nelumbo nucifera (sacred lotus) ]

Gene ID: 104595175, updated on 21-Dec-2023

Summary

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Gene symbol
LOC104595175
Gene description
riboflavin biosynthesis protein PYRD, chloroplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Nelumbo nucifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Proteales; Nelumbonaceae; Nelumbo
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Chinese Lotus 1.1 (GCF_000365185.1) Unplaced Scaffold NW_010729086.1 (3686096..3689111)

NW_010729086.1Genomic Context describing neighboring genes Neighboring gene rop guanine nucleotide exchange factor 9-like Neighboring gene uncharacterized LOC104595174 Neighboring gene myb-related protein 3R-1-like Neighboring gene hydroxyphenylpyruvate reductase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010729086.1 Unplaced Scaffold Reference Chinese Lotus 1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables diaminohydroxyphosphoribosylaminopyrimidine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in riboflavin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
riboflavin biosynthesis protein PYRD, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nelumbo nucifera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Chinese Lotus 1.1 Primary Assembly

Genomic

  1. NW_010729086.1 Reference Chinese Lotus 1.1 Primary Assembly

    Range
    3686096..3689111
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019197389.1 → XP_019052934.1  riboflavin biosynthesis protein PYRD, chloroplastic isoform X3

    UniProtKB/TrEMBL
    A0A1U8Q289

  2. XM_019197388.1 → XP_019052933.1  riboflavin biosynthesis protein PYRD, chloroplastic isoform X1

    UniProtKB/TrEMBL
    A0A1U8Q292

  3. XM_010255788.2 → XP_010254090.1  riboflavin biosynthesis protein PYRD, chloroplastic isoform X4

    UniProtKB/TrEMBL
    A0A1U7ZJF7
    Conserved Domains (2) summary
    PLN02807
    Location:55 → 371
    PLN02807; diaminohydroxyphosphoribosylaminopyrimidine deaminase
    COG0117
    Location:75 → 218
    RibD1; Pyrimidine deaminase domain of riboflavin biosynthesis protein RibD [Coenzyme transport and metabolism]

  4. XM_010255787.2 → XP_010254089.1  riboflavin biosynthesis protein PYRD, chloroplastic isoform X2

    UniProtKB/TrEMBL
    A0A1U7ZQA8
    Conserved Domains (3) summary
    PLN02807
    Location:55 → 429
    PLN02807; diaminohydroxyphosphoribosylaminopyrimidine deaminase
    COG0117
    Location:75 → 218
    RibD1; Pyrimidine deaminase domain of riboflavin biosynthesis protein RibD [Coenzyme transport and metabolism]
    cl17279
    Location:220 → 430
    DHFR; Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5, ...
Nucleotide Protein
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