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LOC104427599 cullin-1 [ Eucalyptus grandis ]

Gene ID: 104427599, updated on 7-Dec-2023

Summary

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Gene symbol
LOC104427599
Gene description
cullin-1
Locus tag
EUGRSUZ_B01516
Gene type
protein coding
RefSeq status
MODEL
Organism
Eucalyptus grandis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Genomic context

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Location:
chromosome: 2
Exon count:
21
Annotation release Status Assembly Chr Location
102 current ASM1654582v1 (GCF_016545825.1) 2 NC_052613.1 (24234991..24244753)
101 previous assembly Egrandis1_0 (GCF_000612305.1) Unplaced Scaffold NW_010092439.1 (24937226..24945900, complement)

Chromosome 2 - NC_052613.1Genomic Context describing neighboring genes Neighboring gene bet1-like SNARE 1-1 Neighboring gene uncharacterized LOC120290368 Neighboring gene cullin-1 Neighboring gene ubiquitin-like modifier-activating enzyme atg7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cullin-RING ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cullin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eucalyptus grandis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654582v1 Primary Assembly

Genomic

  1. NC_052613.1 Reference ASM1654582v1 Primary Assembly

    Range
    24234991..24244753
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039307350.1 → XP_039163284.1  cullin-1 isoform X3

    UniProtKB/TrEMBL
    A0A059D1T1
    Conserved Domains (2) summary
    pfam00888
    Location:21 → 648
    Cullin; Cullin family
    pfam10557
    Location:675 → 736
    Cullin_Nedd8; Cullin protein neddylation domain

  2. XM_039307349.1 → XP_039163283.1  cullin-1 isoform X3

    UniProtKB/TrEMBL
    A0A059D1T1
    Conserved Domains (2) summary
    pfam00888
    Location:21 → 648
    Cullin; Cullin family
    pfam10557
    Location:675 → 736
    Cullin_Nedd8; Cullin protein neddylation domain

  3. XM_018868177.2 → XP_018723722.2  cullin-1 isoform X1

    UniProtKB/TrEMBL
    A0A059D1T1
    Conserved Domains (2) summary
    pfam00888
    Location:62 → 689
    Cullin; Cullin family
    pfam10557
    Location:716 → 777
    Cullin_Nedd8; Cullin protein neddylation domain

  4. XM_039307348.1 → XP_039163282.1  cullin-1 isoform X2

    UniProtKB/TrEMBL
    A0A059D1T1
    Conserved Domains (2) summary
    pfam00888
    Location:36 → 663
    Cullin; Cullin family
    pfam10557
    Location:690 → 751
    Cullin_Nedd8; Cullin protein neddylation domain
Nucleotide Protein
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