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LINC01090 long intergenic non-protein coding RNA 1090 [ Homo sapiens (human) ]

Gene ID: 104355152, updated on 10-Oct-2023

Summary

Official Symbol
LINC01090provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1090provided by HGNC
Primary source
HGNC:HGNC:49201
See related
Ensembl:ENSG00000231689 AllianceGenome:HGNC:49201
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01090 in Genome Data Viewer
Location:
2q32.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (188035596..188287691, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (188524427..188776463, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (188900323..189152418, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373788 Neighboring gene MPRA-validated peak3989 silencer Neighboring gene ST13, Hsp70 interacting protein pseudogene 2 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:188897853-188898830 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:188988476-188989065 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:189038945-189039601 Neighboring gene uncharacterized LOC124907927 Neighboring gene MPRA-validated peak3993 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16845 Neighboring gene MPRA-validated peak3994 silencer Neighboring gene chromosome 18 open reading frame 25 pseudogene Neighboring gene Sharpr-MPRA regulatory region 8723 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:189143651-189144345 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:189158453-189159336 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:189163339-189164538 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:189167937-189168854 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:189168855-189169772 Neighboring gene RNA, 5S ribosomal pseudogene 114 Neighboring gene microRNA 561 Neighboring gene GULP PTB domain containing engulfment adaptor 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:189260185-189260684 Neighboring gene uncharacterized LOC124906107

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126396.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC013445, AC092649, AC104131
    Related
    ENST00000434418.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    188035596..188287691 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    188524427..188776463 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)