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LINC01162 long intergenic non-protein coding RNA 1162 [ Homo sapiens (human) ]

Gene ID: 104355138, updated on 21-Mar-2023

Summary

Official Symbol
LINC01162provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1162provided by HGNC
Primary source
HGNC:HGNC:49528
See related
Ensembl:ENSG00000232790 AllianceGenome:HGNC:49528
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01162 in Genome Data Viewer
Location:
7p21.1-p15.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_03 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (20835431..21023148)
RS_2023_03 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (20971495..21159248)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (20875050..21062767)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:20866537-20867736 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:20874484-20874984 Neighboring gene ribosomal protein L23 pseudogene 8 Neighboring gene ribosomal protein S26 pseudogene 30 Neighboring gene VISTA enhancer hs1007 Neighboring gene VISTA enhancer hs110 Neighboring gene VISTA enhancer hs1148 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:21050446-21051645 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:21069658-21070388 Neighboring gene VISTA enhancer hs1226

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126381.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005251, AC006481, AC007090
    Related
    ENST00000447262.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    20835431..21023148
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    20971495..21159248
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)