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LINC01309 long intergenic non-protein coding RNA 1309 [ Homo sapiens (human) ]

Gene ID: 104326190, updated on 10-Oct-2023

Summary

Official Symbol
LINC01309provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1309provided by HGNC
Primary source
HGNC:HGNC:50497
See related
AllianceGenome:HGNC:50497
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TCONS_l2_00007459
Expression
Restricted expression toward testis (RPKM 2.6) See more
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Genomic context

See LINC01309 in Genome Data Viewer
Location:
13q33.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (103425200..103427685)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (102643240..102645723)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (104077550..104080035)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370338 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:104003539-104004232 Neighboring gene uncharacterized LOC105370339 Neighboring gene NANOG hESC enhancer GRCh37_chr13:104049244-104049745 Neighboring gene ATPase H+ transporting V1 subunit G1 pseudogene 7 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:104591465-104592664 Neighboring gene uncharacterized LOC124903203 Neighboring gene uncharacterized LOC124903204

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126374.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA421210, AL162717, BG219159

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    103425200..103427685
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    102643240..102645723
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)