U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC01309 long independently transcribed non-coding RNA 1309 [ Homo sapiens (human) ]

Gene ID: 104326190, updated on 13-Jun-2026
Official Symbol
LINC01309provided by HGNC
Official Full Name
long independently transcribed non-coding RNA 1309provided by HGNC
Primary source
HGNC:HGNC:50497
See related
AllianceGenome:HGNC:50497
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TCONS_l2_00007459
Expression
Restricted expression toward testis (RPKM 2.6) See more
Try the new Gene page
Try the new Transcripts and proteins table
See LINC01309 in Genome Data Viewer
Location:
13q33.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2025_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (103425200..103427685)
RS_2025_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (102643240..102645723)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (104077550..104080035)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370338 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:104003539-104004232 Neighboring gene uncharacterized LOC105370339 Neighboring gene NANOG hESC enhancer GRCh37_chr13:104049244-104049745 Neighboring gene ATPase H+ transporting V1 subunit G1 pseudogene 7 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:104591465-104592664 Neighboring gene uncharacterized LOC124903203 Neighboring gene uncharacterized LOC124903204

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Related articles in PubMed

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. Harrington JJ, et al. Nat Biotechnol, 2001 May. PMID 11329013

GeneRIFs: Gene References Into Functions

Review eQTL and phenotype association data in this region using PheGenI

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Other Names

  • long intergenic non-protein coding RNA 1309

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126374.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA421210, AL162717, BG219159

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2025_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    103425200..103427685
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    102643240..102645723
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials