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SLC6A4 solute carrier family 6 member 4 [ Egretta garzetta (little egret) ]

Gene ID: 104121915, updated on 12-Mar-2024

Summary

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Gene symbol
SLC6A4
Gene description
solute carrier family 6 member 4
Locus tag
Z169_00884
Gene type
protein coding
RefSeq status
MODEL
Organism
Egretta garzetta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Pelecaniformes; Ardeidae; Egretta
Orthologs
human mouse all
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Genomic context

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See SLC6A4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
101 current ASM68718v1 (GCF_000687185.1) Unplaced Scaffold NW_009258884.1 (2964029..2988159)

NW_009258884.1Genomic Context describing neighboring genes Neighboring gene transmembrane and immunoglobulin domain containing 1 Neighboring gene bleomycin hydrolase Neighboring gene nuclear speckle splicing regulatory protein 1 Neighboring gene EF-hand calcium binding domain 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009258884 Unplaced Scaffold Reference ASM68718v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serotonin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serotonin:sodium:chloride symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in serotonin uptake IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sodium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium-dependent serotonin transporter
Names
Sodium-dependent serotonin transporter

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Egretta garzetta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68718v1 Primary Assembly

Genomic

  1. NW_009258884.1 Reference ASM68718v1 Primary Assembly

    Range
    2964029..2988159
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035889571.1 → XP_035745464.1  sodium-dependent serotonin transporter

    UniProtKB/TrEMBL
    A0A091JJZ6
    Conserved Domains (2) summary
    cd11513
    Location:119 → 655
    SLC6sbd_SERT; Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain
    pfam03491
    Location:50 → 87
    5HT_transport_N; Serotonin (5-HT) neurotransmitter transporter, N-terminus

  2. XM_009633980.2 → XP_009632275.1  sodium-dependent serotonin transporter

    UniProtKB/TrEMBL
    A0A091JJZ6
    Conserved Domains (2) summary
    cd11513
    Location:119 → 655
    SLC6sbd_SERT; Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain
    pfam03491
    Location:50 → 87
    5HT_transport_N; Serotonin (5-HT) neurotransmitter transporter, N-terminus
Nucleotide Protein
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