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Plin1 perilipin 1 [ Mus musculus (house mouse) ]

Gene ID: 103968, updated on 10-Oct-2020

Summary

Official Symbol
Plin1provided by MGI
Official Full Name
perilipin 1provided by MGI
Primary source
MGI:MGI:1890505
See related
Ensembl:ENSMUSG00000030546
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
P; Peri; Plin; 6030432J05Rik
Expression
Biased expression in subcutaneous fat pad adult (RPKM 403.0), mammary gland adult (RPKM 366.1) and 4 other tissues See more
Orthologs

Genomic context

See Plin1 in Genome Data Viewer
Location:
7; 7 D2
Exon count:
9
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (79370912..79382652, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (79721164..79732904, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (86866050..86877662, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene TOPBP1-interacting checkpoint and replication regulator Neighboring gene uncharacterized LOC118567517 Neighboring gene kinesin family member 7 Neighboring gene peroxisomal biogenesis factor 11 alpha Neighboring gene WD repeat domain 93

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
lipid catabolic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytosol IDA
Inferred from Direct Assay
more info
PubMed 
endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
lipid droplet IDA
Inferred from Direct Assay
more info
PubMed 
lipid droplet ISO
Inferred from Sequence Orthology
more info
 
lipid droplet TAS
Traceable Author Statement
more info
 

General protein information

Preferred Names
perilipin-1
Names
lipid droplet-associated protein
perilipin A
perilipin B

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001113471.1NP_001106942.1  perilipin-1

    See identical proteins and their annotated locations for NP_001106942.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 both encode the same protein.
    Source sequence(s)
    BC037748, BC096685, CJ060785
    Consensus CDS
    CCDS21385.1
    UniProtKB/Swiss-Prot
    Q8CGN5
    Related
    ENSMUSP00000146028.1, ENSMUST00000205915.1
    Conserved Domains (1) summary
    pfam03036
    Location:14391
    Perilipin; Perilipin family
  2. NM_175640.2NP_783571.2  perilipin-1

    See identical proteins and their annotated locations for NP_783571.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 both encode the same protein.
    Source sequence(s)
    BC037748, BC096685, BY723040
    Consensus CDS
    CCDS21385.1
    UniProtKB/Swiss-Prot
    Q8CGN5
    Related
    ENSMUSP00000032762.7, ENSMUST00000032762.13
    Conserved Domains (1) summary
    pfam03036
    Location:14391
    Perilipin; Perilipin family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    79370912..79382652 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011250776.3XP_011249078.1  perilipin-1 isoform X1

    See identical proteins and their annotated locations for XP_011249078.1

    UniProtKB/Swiss-Prot
    Q8CGN5
    Conserved Domains (1) summary
    pfam03036
    Location:14391
    Perilipin; Perilipin family
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