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LOC103862102 aspartate aminotransferase, chloroplastic [ Brassica rapa (field mustard) ]

Gene ID: 103862102, updated on 7-Dec-2023

Summary

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Gene symbol
LOC103862102
Gene description
aspartate aminotransferase, chloroplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica rapa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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Location:
chromosome: A3
Exon count:
12
Annotation release Status Assembly Chr Location
103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A03 NC_024797.2 (29989708..29992925, complement)
101 previous assembly Brapa_1.0 (GCF_000309985.1) A3 NC_024797.1 (28544458..28547633, complement)

Chromosome A03 - NC_024797.2Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At2g39795, mitochondrial Neighboring gene 60S ribosomal protein L39-1 Neighboring gene B3 domain-containing transcription repressor VAL2 Neighboring gene proline-rich protein 36

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in amino acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartate aminotransferase, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAAS_Brap_v3.01 Primary Assembly

Genomic

  1. NC_024797.2 Reference CAAS_Brap_v3.01 Primary Assembly

    Range
    29989708..29992925 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033289027.1 → XP_033144918.1  aspartate aminotransferase, chloroplastic

    UniProtKB/TrEMBL
    A0A397L3H5, M4E5B5
    Conserved Domains (1) summary
    PLN02397
    Location:30 → 453
    PLN02397; aspartate transaminase
Nucleotide Protein
Heading Accession and Version

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