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LOC103855796 acetylornithine deacetylase [ Brassica rapa (field mustard) ]

Gene ID: 103855796, updated on 7-Dec-2023

Summary

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Gene symbol
LOC103855796
Gene description
acetylornithine deacetylase
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica rapa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC103855796 in Genome Data Viewer
Location:
chromosome: A1
Exon count:
9
Annotation release Status Assembly Chr Location
103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A01 NC_024795.2 (4740774..4743415)
101 previous assembly Brapa_1.0 (GCF_000309985.1) A1 NC_024795.1 (4575526..4578053)

Chromosome A01 - NC_024795.2Genomic Context describing neighboring genes Neighboring gene peroxisomal (S)-2-hydroxy-acid oxidase GLO5 Neighboring gene AT-hook motif nuclear-localized protein 23 Neighboring gene probable transcriptional regulator RABBIT EARS Neighboring gene uncharacterized LOC103855787 Neighboring gene uncharacterized LOC103855806 Neighboring gene uncharacterized LOC103863955

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acetylornithine deacetylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAAS_Brap_v3.01 Primary Assembly

Genomic

  1. NC_024795.2 Reference CAAS_Brap_v3.01 Primary Assembly

    Range
    4740774..4743415
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009132835.3 → XP_009131083.1  acetylornithine deacetylase

    UniProtKB/TrEMBL
    A0A398AK16, M4D9U8
    Conserved Domains (2) summary
    cd08012
    Location:7 → 429
    M20_ArgE-related; M20 Peptidases with simlarity to acetylornithine deacetylases
    pfam01546
    Location:93 → 428
    Peptidase_M20; Peptidase family M20/M25/M40
Nucleotide Protein
Heading Accession and Version

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