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LOC103849259 WD-40 repeat-containing protein MSI4 [ Brassica rapa (field mustard) ]

Gene ID: 103849259, updated on 7-Dec-2023

Summary

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Gene symbol
LOC103849259
Gene description
WD-40 repeat-containing protein MSI4
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica rapa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC103849259 in Genome Data Viewer
Location:
chromosome: A7
Exon count:
15
Annotation release Status Assembly Chr Location
103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A07 NC_024801.2 (959164..962418, complement)
101 previous assembly Brapa_1.0 (GCF_000309985.1) Unplaced Scaffold NW_008737329.1 (45803..48951)

Chromosome A07 - NC_024801.2Genomic Context describing neighboring genes Neighboring gene glutamate-rich WD repeat-containing protein 1-like Neighboring gene uncharacterized LOC103849262 Neighboring gene putative F-box protein At1g47790 Neighboring gene cytokinin dehydrogenase 2 Neighboring gene uncharacterized LOC103849264

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD-40 repeat-containing protein MSI4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAAS_Brap_v3.01 Primary Assembly

Genomic

  1. NC_024801.2 Reference CAAS_Brap_v3.01 Primary Assembly

    Range
    959164..962418 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009126069.3 → XP_009124317.1  WD-40 repeat-containing protein MSI4

    UniProtKB/TrEMBL
    A0A3P6BFI6, M4FHU9
    Conserved Domains (4) summary
    COG2319
    Location:153 → 474
    WD40; WD40 repeat [General function prediction only]
    pfam12265
    Location:56 → 121
    CAF1C_H4-bd; Histone-binding protein RBBP4 or subunit C of CAF1 complex
    sd00039
    Location:158 → 207
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:153 → 467
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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