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Cntn4 contactin 4 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103751194, updated on 11-Mar-2024

Summary

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Gene symbol
Cntn4
Gene description
contactin 4
See related
Ensembl:ENSNGAG00000000209
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human all
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Genomic context

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See Cntn4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008356458.1 (287886..1410205)

NW_008356458.1Genomic Context describing neighboring genes Neighboring gene replication factor C subunit 4-like Neighboring gene 40S ribosomal protein S23 pseudogene Neighboring gene UPF0183 protein C16orf70 pseudogene Neighboring gene uncharacterized LOC115067860 Neighboring gene interleukin 5 receptor subunit alpha Neighboring gene tRNA nucleotidyl transferase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008356458 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008356458.1 Reference S.galili_v1.0 Primary Assembly

    Range
    287886..1410205
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008854554.1 → XP_008852776.1  contactin-4

    UniProtKB/TrEMBL
    A0A8C6Q9T8, A0A8C6QCU8
    Related
    ENSNGAP00000000264.1, ENSNGAT00000000270.1
    Conserved Domains (4) summary
    cd05853
    Location:513 → 597
    Ig6_Contactin-4; Sixth immunoglobulin (Ig) domain of contactin-4
    cd00063
    Location:597 → 690
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd04969
    Location:422 → 494
    Ig5_Contactin; Fifth immunoglobulin (Ig) domain of contactin
    cl11960
    Location:225 → 313
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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