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Tnrc6c trinucleotide repeat containing adaptor 6C [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103746021, updated on 11-Mar-2024

Summary

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Gene symbol
Tnrc6c
Gene description
trinucleotide repeat containing adaptor 6C
See related
Ensembl:ENSNGAG00000012203
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008351025.1 (96500..179347, complement)

NW_008351025.1Genomic Context describing neighboring genes Neighboring gene chromosome unknown C17orf99 homolog Neighboring gene transmembrane channel like 8 Neighboring gene transmembrane channel like 6 Neighboring gene transient receptor potential cation channel subfamily M member 7 pseudogene Neighboring gene uncharacterized LOC115066783

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008351025 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in miRNA-mediated post-transcriptional gene silencing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trinucleotide repeat-containing gene 6C protein
Names
trinucleotide repeat containing 6C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008351025.1 Reference S.galili_v1.0 Primary Assembly

    Range
    96500..179347 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017801947.2 → XP_017657436.2  trinucleotide repeat-containing gene 6C protein isoform X1

    UniProtKB/TrEMBL
    A0A8C6QWC9
    Related
    ENSNGAP00000009554.1, ENSNGAT00000015069.1
    Conserved Domains (5) summary
    cd12713
    Location:1714 → 1796
    RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
    cd14283
    Location:1146 → 1183
    UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
    pfam10427
    Location:1034 → 1149
    Ago_hook; Argonaute hook
    pfam12938
    Location:1225 → 1450
    M_domain; M domain of GW182
    pfam16608
    Location:1459 → 1713
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  2. XM_029553533.1 → XP_029409393.1  trinucleotide repeat-containing gene 6C protein isoform X2

    UniProtKB/TrEMBL
    A0A8C6QWC9
    Conserved Domains (5) summary
    cd12713
    Location:1702 → 1784
    RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
    cd14283
    Location:1134 → 1171
    UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
    pfam10427
    Location:1022 → 1137
    Ago_hook; Argonaute hook
    pfam12938
    Location:1213 → 1438
    M_domain; M domain of GW182
    pfam16608
    Location:1447 → 1701
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  3. XM_029553532.1 → XP_029409392.1  trinucleotide repeat-containing gene 6C protein isoform X2

    UniProtKB/TrEMBL
    A0A8C6QWC9
    Conserved Domains (5) summary
    cd12713
    Location:1702 → 1784
    RRM_TNRC6C; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C)
    cd14283
    Location:1134 → 1171
    UBA_TNR6C; UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins
    pfam10427
    Location:1022 → 1137
    Ago_hook; Argonaute hook
    pfam12938
    Location:1213 → 1438
    M_domain; M domain of GW182
    pfam16608
    Location:1447 → 1701
    TNRC6-PABC_bdg; TNRC6-PABC binding domain
Nucleotide Protein
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