U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Safb scaffold attachment factor B [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103737210, updated on 11-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Safb
Gene description
scaffold attachment factor B
See related
Ensembl:ENSNGAG00000019882
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008341457.1 (1165024..1187724, complement)

NW_008341457.1Genomic Context describing neighboring genes Neighboring gene hydroxysteroid 11-beta dehydrogenase 1 like Neighboring gene mitochondrial contact site and cristae organizing system subunit 13 Neighboring gene scaffold attachment factor B2 Neighboring gene zinc and ring finger 4

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_008341457 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
scaffold attachment factor B1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008341457.1 Reference S.galili_v1.0 Primary Assembly

    Range
    1165024..1187724 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008836946.3 → XP_008835168.1  scaffold attachment factor B1 isoform X1

    UniProtKB/TrEMBL
    A0A8C6RMZ2
    Conserved Domains (5) summary
    smart00513
    Location:31 → 65
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    PTZ00121
    Location:487 → 640
    PTZ00121; MAEBL; Provisional
    PLN03124
    Location:32 → 205
    PLN03124; poly [ADP-ribose] polymerase; Provisional
    COG0724
    Location:338 → 535
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12679
    Location:435 → 510
    RRM_SAFB1_SAFB2; RNA recognition motif in scaffold attachment factor B1 (SAFB1), scaffold attachment factor B2 (SAFB2), and similar proteins

  2. XM_008836949.3 → XP_008835171.1  scaffold attachment factor B1 isoform X4

    UniProtKB/TrEMBL
    A0A8C6WAY7
    Conserved Domains (5) summary
    smart00513
    Location:31 → 65
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    PTZ00121
    Location:487 → 640
    PTZ00121; MAEBL; Provisional
    PLN03124
    Location:32 → 205
    PLN03124; poly [ADP-ribose] polymerase; Provisional
    COG0724
    Location:338 → 535
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12679
    Location:435 → 510
    RRM_SAFB1_SAFB2; RNA recognition motif in scaffold attachment factor B1 (SAFB1), scaffold attachment factor B2 (SAFB2), and similar proteins

  3. XM_008836947.3 → XP_008835169.1  scaffold attachment factor B1 isoform X2

    UniProtKB/TrEMBL
    A0A8C6WAY7
    Related
    ENSNGAP00000020431.1, ENSNGAT00000026100.1
    Conserved Domains (5) summary
    smart00513
    Location:31 → 65
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    PTZ00121
    Location:487 → 640
    PTZ00121; MAEBL; Provisional
    PLN03124
    Location:32 → 205
    PLN03124; poly [ADP-ribose] polymerase; Provisional
    COG0724
    Location:338 → 535
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12679
    Location:435 → 510
    RRM_SAFB1_SAFB2; RNA recognition motif in scaffold attachment factor B1 (SAFB1), scaffold attachment factor B2 (SAFB2), and similar proteins

  4. XM_008836948.3 → XP_008835170.1  scaffold attachment factor B1 isoform X3

    UniProtKB/TrEMBL
    A0A8C6RMZ2
    Related
    ENSNGAP00000020422.1, ENSNGAT00000026091.1
    Conserved Domains (5) summary
    smart00513
    Location:31 → 65
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    PTZ00121
    Location:487 → 640
    PTZ00121; MAEBL; Provisional
    PLN03124
    Location:32 → 205
    PLN03124; poly [ADP-ribose] polymerase; Provisional
    COG0724
    Location:338 → 535
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12679
    Location:435 → 510
    RRM_SAFB1_SAFB2; RNA recognition motif in scaffold attachment factor B1 (SAFB1), scaffold attachment factor B2 (SAFB2), and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.