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LOC103719623 biotin--protein ligase 2-like [ Phoenix dactylifera (date palm) ]

Gene ID: 103719623, updated on 7-Dec-2023

Summary

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Gene symbol
LOC103719623
Gene description
biotin--protein ligase 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Phoenix dactylifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Genomic context

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See LOC103719623 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
10
Annotation release Status Assembly Chr Location
103 current palm_55x_up_171113_PBpolish2nd_filt_p (GCF_009389715.1) 9 NC_052400.1 (1479735..1492098, complement)
102 previous assembly DPV01 (GCF_000413155.1) Unplaced Scaffold NW_008246861.1 (100039..112908)

Chromosome 9 - NC_052400.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At4g20770 Neighboring gene thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial-like Neighboring gene exocyst complex component EXO70I-like Neighboring gene splicing factor 3B subunit 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables biotin-[acetyl-CoA-carboxylase] ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein modification process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
biotin--protein ligase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phoenix dactylifera Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference palm_55x_up_171113_PBpolish2nd_filt_p Primary Assembly

Genomic

  1. NC_052400.1 Reference palm_55x_up_171113_PBpolish2nd_filt_p Primary Assembly

    Range
    1479735..1492098 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039129764.1 → XP_038985692.1  biotin--protein ligase 2-like isoform X1

    UniProtKB/TrEMBL
    A0A8B9AIU4
    Conserved Domains (1) summary
    cd16442
    Location:133 → 307
    BPL; biotin protein ligase

  2. XM_008808954.3 → XP_008807176.2  biotin--protein ligase 2-like isoform X2

    UniProtKB/TrEMBL
    A0A8B7CVR0
    Conserved Domains (1) summary
    cd16442
    Location:133 → 307
    BPL; biotin protein ligase

  3. XM_039129763.1 → XP_038985691.1  biotin--protein ligase 2-like isoform X1

    UniProtKB/TrEMBL
    A0A8B9AIU4
    Conserved Domains (1) summary
    cd16442
    Location:133 → 307
    BPL; biotin protein ligase

  4. XM_008808952.3 → XP_008807174.2  biotin--protein ligase 2-like isoform X2

    UniProtKB/TrEMBL
    A0A8B7CVR0
    Conserved Domains (1) summary
    cd16442
    Location:133 → 307
    BPL; biotin protein ligase

RNA

  1. XR_003387994.2 RNA Sequence

  2. XR_003387993.2 RNA Sequence

Nucleotide Protein
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