U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC103716575 ankyrin-1 [ Phoenix dactylifera (date palm) ]

Gene ID: 103716575, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC103716575
Gene description
ankyrin-1
Gene type
protein coding
RefSeq status
MODEL
Organism
Phoenix dactylifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC103716575 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
13
Annotation release Status Assembly Chr Location
103 current palm_55x_up_171113_PBpolish2nd_filt_p (GCF_009389715.1) 8 NC_052399.1 (12658146..12684190, complement)
102 previous assembly DPV01 (GCF_000413155.1) Unplaced Scaffold NW_008246739.1 (240054..266027)

Chromosome 8 - NC_052399.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120111576 Neighboring gene DNA-directed RNA polymerase V subunit 7-like Neighboring gene CRM-domain containing factor CFM3, chloroplastic/mitochondrial Neighboring gene GABA transporter 1-like Neighboring gene transfer RNA tyrosine (anticodon GUA)

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ankyrin-1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Phoenix dactylifera Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference palm_55x_up_171113_PBpolish2nd_filt_p Primary Assembly

Genomic

  1. NC_052399.1 Reference palm_55x_up_171113_PBpolish2nd_filt_p Primary Assembly

    Range
    12658146..12684190 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008804617.3 → XP_008802839.1  ankyrin-1

    UniProtKB/TrEMBL
    A0A8B7CNA6
    Conserved Domains (8) summary
    smart00028
    Location:337 → 363
    TPR; Tetratricopeptide repeats
    cd00204
    Location:49 → 174
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00006
    Location:335 → 359
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:399 → 432
    TPR_1; Tetratricopeptide repeat
    pfam12796
    Location:59 → 151
    Ank_2; Ankyrin repeats (3 copies)
    pfam13414
    Location:330 → 396
    TPR_11; TPR repeat
    pfam13637
    Location:20 → 75
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:88 → 119
    ANK; ANK repeat [structural motif]

RNA

  1. XR_605546.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases