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TBX2-AS1 TBX2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 103689912, updated on 27-Aug-2024

Summary

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Official Symbol
TBX2-AS1provided by HGNC
Official Full Name
TBX2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:50355
See related
Ensembl:ENSG00000267280 AllianceGenome:HGNC:50355
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in fat (RPKM 4.2), lung (RPKM 3.3) and 17 other tissues See more
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Genomic context

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Location:
17q23.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (61393456..61399606, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (62262322..62268473, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (59470817..59476967, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene BCAS3 microtubule associated cell migration factor Neighboring gene BCAS3 antisense RNA 1 Neighboring gene uncharacterized LOC124904041 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:59200454-59200632 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:59322561-59323086 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:59323087-59323612 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:59360941-59361441 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:59392337-59392838 Neighboring gene Sharpr-MPRA regulatory region 10586 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr17:59429722-59430668 Neighboring gene Sharpr-MPRA regulatory region 2758 Neighboring gene uncharacterized LOC101927855 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:59457237-59457737 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:59474489-59475040 Neighboring gene TBX2 promoter region Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:59482769-59483666 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8796 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8797 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8798 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:59487827-59488409 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8800 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8801 Neighboring gene long intergenic non-protein coding RNA 2875 Neighboring gene T-box transcription factor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125749.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC005746
    Related
    ENST00000590421.2

  2. NR_125750.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site at the 5' terminal exon and contains an alternate internal exon, resulting in a shorter transcript compared to variant 1.
    Source sequence(s)
    AC005746

  3. NR_125751.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate splice site at the 5' terminal exon, resulting in a shorter transcript than variant 1.
    Source sequence(s)
    AC005746
    Related
    ENST00000591313.7

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    61393456..61399606 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    62262322..62268473 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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