U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PDCD11 programmed cell death 11 [ Ursus maritimus (polar bear) ]

Gene ID: 103659103, updated on 11-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
PDCD11
Gene description
programmed cell death 11
See related
Ensembl:ENSUMAG00000023567
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus maritimus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
36
Annotation release Status Assembly Chr Location
101 current ASM1731132v1 (GCF_017311325.1) Unplaced Scaffold NW_024426885.1 (25219475..25259946, complement)
100 previous assembly UrsMar_1.0 (GCF_000687225.1) Unplaced Scaffold NW_007907022.1 (6804641..6845046)

NW_024426885.1Genomic Context describing neighboring genes Neighboring gene calcium homeostasis modulator 1 Neighboring gene calcium homeostasis modulator family member 2 Neighboring gene ATP synthase membrane subunit k Neighboring gene TATA-box binding protein associated factor 5 Neighboring gene uncharacterized LOC103682309

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
LOW QUALITY PROTEIN: protein RRP5 homolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Ursus maritimus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1731132v1 Primary Assembly

Genomic

  1. NW_024426885.1 Reference ASM1731132v1 Primary Assembly

    Range
    25219475..25259946 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040624443.1 → XP_040480377.1  LOW QUALITY PROTEIN: protein RRP5 homolog

    UniProtKB/TrEMBL
    A0A452VGH6, A0A8M1FEP3
    Conserved Domains (10) summary
    COG0457
    Location:1580 → 1794
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG0539
    Location:376 → 793
    RpsA; Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]
    cd05693
    Location:77 → 173
    S1_Rrp5_repeat_hs1_sc1; Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces ...
    cd05694
    Location:180 → 260
    S1_Rrp5_repeat_hs2_sc2; Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces ...
    cd05695
    Location:278 → 341
    S1_Rrp5_repeat_hs3; Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces ...
    cd05701
    Location:920 → 988
    S1_Rrp5_repeat_hs10; Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces ...
    cd05702
    Location:1031 → 1100
    S1_Rrp5_repeat_hs11_sc8; Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces ...
    cd05703
    Location:1145 → 1219
    S1_Rrp5_repeat_hs12_sc9; Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces ...
    sd00006
    Location:1693 → 1720
    TPR; TPR repeat [structural motif]
    cl09927
    Location:1315 → 1388
    S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.