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nup153 nucleoporin 153 [ Poecilia reticulata (guppy) ]

Gene ID: 103472388, updated on 11-Mar-2024

Summary

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Gene symbol
nup153
Gene description
nucleoporin 153
See related
Ensembl:ENSPREG00000007463
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG11
Exon count:
22
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG11 NC_024341.1 (14185504..14203822, complement)

Linkage Group LG11 - NC_024341.1Genomic Context describing neighboring genes Neighboring gene tektin-4-like Neighboring gene piggyBac transposable element-derived protein 2-like Neighboring gene phosphatidylserine synthase 1b Neighboring gene mitochondrial transcription termination factor 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024341.1 Chromosome LG11 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear localization sequence binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein import into nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear pore complex protein Nup153
Names
nucleoporin 153kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024341.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    14185504..14203822 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008422007.2 → XP_008420229.1  nuclear pore complex protein Nup153 isoform X2

    Conserved Domains (3) summary
    sd00025
    Location:674 → 693
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam00641
    Location:804 → 833
    zf-RanBP; Zn-finger in Ran binding protein and others
    pfam08604
    Location:120 → 630
    Nup153; Nucleoporin Nup153-like

  2. XM_008422005.2 → XP_008420227.1  nuclear pore complex protein Nup153 isoform X1

    UniProtKB/TrEMBL
    A0A3P9NMY4
    Related
    ENSPREP00000010926.1, ENSPRET00000011053.1
    Conserved Domains (3) summary
    sd00025
    Location:685 → 704
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam00641
    Location:815 → 844
    zf-RanBP; Zn-finger in Ran binding protein and others
    pfam08604
    Location:120 → 641
    Nup153; Nucleoporin Nup153-like
Nucleotide Protein
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