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emg1 EMG1 N1-specific pseudouridine methyltransferase [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103387936, updated on 11-Mar-2024

Summary

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Gene symbol
emg1
Gene description
EMG1 N1-specific pseudouridine methyltransferase
See related
Ensembl:ENSCSEG00000020136
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
Orthologs
human zebrafish all
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Genomic context

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See emg1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 13 NC_024319.1 (2194603..2195979)

Chromosome 13 - NC_024319.1Genomic Context describing neighboring genes Neighboring gene inhibitor of growth family, member 4 Neighboring gene NOP2 nucleolar protein homolog (yeast) Neighboring gene Kell metallo-endopeptidase (Kell blood group) Neighboring gene zyxin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024319.1 Chromosome 13 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables rRNA (pseudouridine) methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rRNA base methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ribosomal RNA small subunit methyltransferase NEP1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024319.1 Reference Cse_v1.0 Primary Assembly

    Range
    2194603..2195979
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017038118.2 → XP_016893607.1  ribosomal RNA small subunit methyltransferase NEP1

    UniProtKB/TrEMBL
    A0A3P8X397
    Related
    ENSCSEP00000031450.1, ENSCSET00000031859.1
    Conserved Domains (1) summary
    pfam03587
    Location:39 → 230
    EMG1; EMG1/NEP1 methyltransferase
Nucleotide Protein
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