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taf15 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor [ Stegastes partitus (bicolor damselfish) ]

Gene ID: 103357865, updated on 11-Mar-2024

Summary

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Gene symbol
taf15
Gene description
TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor
See related
Ensembl:ENSSPAG00000010572
Gene type
protein coding
RefSeq status
MODEL
Organism
Stegastes partitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Stegastes
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current Stegastes_partitus-1.0.2 (GCF_000690725.1) Unplaced Scaffold NW_007578010.1 (24122..33330, complement)

NW_007578010.1Genomic Context describing neighboring genes Neighboring gene matrix metalloproteinase-28-like Neighboring gene P450 (cytochrome) oxidoreductase b Neighboring gene transmembrane protein 120A-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007578010 unplaced scaffold reference Stegastes_partitus-1.0.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein FUS-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Stegastes partitus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Stegastes_partitus-1.0.2

Genomic

  1. NW_007578010.1 Reference Stegastes_partitus-1.0.2

    Range
    24122..33330 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008282603.1 → XP_008280825.1  RNA-binding protein FUS-like

    UniProtKB/TrEMBL
    A0A3B5AKA6
    Related
    ENSSPAP00000013962.1, ENSSPAT00000014199.1
    Conserved Domains (4) summary
    COG0724
    Location:221 → 324
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12535
    Location:233 → 318
    RRM_FUS_TAF15; RNA recognition motif in vertebrate fused in Ewing's sarcoma protein (FUS), TATA-binding protein-associated factor 15 (TAF15) and similar proteins
    sd00029
    Location:355 → 376
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam00641
    Location:353 → 381
    zf-RanBP; Zn-finger in Ran binding protein and others
Nucleotide Protein
Heading Accession and Version

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